Hierarchy For All Packages

Package Hierarchies:

• gov.nih.nci.cbiit.tcga.dcc.common.jaxb.generated.levelthreedata,
• gov.nih.nci.ncicb.tcga.dcc,
• gov.nih.nci.ncicb.tcga.dcc.annotations.security,
• gov.nih.nci.ncicb.tcga.dcc.annotations.security.impl,
• gov.nih.nci.ncicb.tcga.dcc.annotations.service,
• gov.nih.nci.ncicb.tcga.dcc.annotations.web,
• gov.nih.nci.ncicb.tcga.dcc.annotations.web.view,
• gov.nih.nci.ncicb.tcga.dcc.annotations.webservice,
• gov.nih.nci.ncicb.tcga.dcc.bamloader,
• gov.nih.nci.ncicb.tcga.dcc.common,
• gov.nih.nci.ncicb.tcga.dcc.common.annotations,
• gov.nih.nci.ncicb.tcga.dcc.common.aspect.cache,
• gov.nih.nci.ncicb.tcga.dcc.common.bean,
• gov.nih.nci.ncicb.tcga.dcc.common.bean.bam,
• gov.nih.nci.ncicb.tcga.dcc.common.bean.validation,
• gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.validators,
• gov.nih.nci.ncicb.tcga.dcc.common.dao,
• gov.nih.nci.ncicb.tcga.dcc.common.dao.annotations,
• gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc,
• gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.util,
• gov.nih.nci.ncicb.tcga.dcc.common.exception,
• gov.nih.nci.ncicb.tcga.dcc.common.framework,
• gov.nih.nci.ncicb.tcga.dcc.common.generation,
• gov.nih.nci.ncicb.tcga.dcc.common.jaxb,
• gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated,
• gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template,
• gov.nih.nci.ncicb.tcga.dcc.common.levelthreedata.bean,
• gov.nih.nci.ncicb.tcga.dcc.common.mail,
• gov.nih.nci.ncicb.tcga.dcc.common.mail.impl,
• gov.nih.nci.ncicb.tcga.dcc.common.security,
• gov.nih.nci.ncicb.tcga.dcc.common.security.impl,
• gov.nih.nci.ncicb.tcga.dcc.common.service,
• gov.nih.nci.ncicb.tcga.dcc.common.service.annotations,
• gov.nih.nci.ncicb.tcga.dcc.common.util,
• gov.nih.nci.ncicb.tcga.dcc.common.util.md5,
• gov.nih.nci.ncicb.tcga.dcc.common.web,
• gov.nih.nci.ncicb.tcga.dcc.common.web.json,
• gov.nih.nci.ncicb.tcga.dcc.common.web.view,
• gov.nih.nci.ncicb.tcga.dcc.common.webservice,
• gov.nih.nci.ncicb.tcga.dcc.common.webservice.bean,
• gov.nih.nci.ncicb.tcga.dcc.dam,
• gov.nih.nci.ncicb.tcga.dcc.dam.aop,
• gov.nih.nci.ncicb.tcga.dcc.dam.bean,
• gov.nih.nci.ncicb.tcga.dcc.dam.bean.stats,
• gov.nih.nci.ncicb.tcga.dcc.dam.dao,
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.jdbc,
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.usage,
• gov.nih.nci.ncicb.tcga.dcc.dam.processors,
• gov.nih.nci.ncicb.tcga.dcc.dam.service,
• gov.nih.nci.ncicb.tcga.dcc.dam.util,
• gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical,
• gov.nih.nci.ncicb.tcga.dcc.dam.view,
• gov.nih.nci.ncicb.tcga.dcc.dam.view.request,
• gov.nih.nci.ncicb.tcga.dcc.dam.web,
• gov.nih.nci.ncicb.tcga.dcc.dam.web.editor,
• gov.nih.nci.ncicb.tcga.dcc.dam.webservice,
• gov.nih.nci.ncicb.tcga.dcc.data.datastore,
• gov.nih.nci.ncicb.tcga.dcc.data.datastore.server,
• gov.nih.nci.ncicb.tcga.dcc.datareports.bean,
• gov.nih.nci.ncicb.tcga.dcc.datareports.bean.bcrpipeline,
• gov.nih.nci.ncicb.tcga.dcc.datareports.bean.fusioncharts,
• gov.nih.nci.ncicb.tcga.dcc.datareports.bean.webservice,
• gov.nih.nci.ncicb.tcga.dcc.datareports.constants,
• gov.nih.nci.ncicb.tcga.dcc.datareports.dao,
• gov.nih.nci.ncicb.tcga.dcc.datareports.dao.jdbc,
• gov.nih.nci.ncicb.tcga.dcc.datareports.email,
• gov.nih.nci.ncicb.tcga.dcc.datareports.service,
• gov.nih.nci.ncicb.tcga.dcc.datareports.web,
• gov.nih.nci.ncicb.tcga.dcc.datareports.web.json,
• gov.nih.nci.ncicb.tcga.dcc.datareports.webservice,
• gov.nih.nci.ncicb.tcga.dcc.io.api,
• gov.nih.nci.ncicb.tcga.dcc.io.api.codec,
• gov.nih.nci.ncicb.tcga.dcc.io.api.codec.http,
• gov.nih.nci.ncicb.tcga.dcc.io.api.codec.kryo,
• gov.nih.nci.ncicb.tcga.dcc.io.api.config,
• gov.nih.nci.ncicb.tcga.dcc.io.api.domain.analytics,
• gov.nih.nci.ncicb.tcga.dcc.io.api.domain.message,
• gov.nih.nci.ncicb.tcga.dcc.io.api.domain.protocol,
• gov.nih.nci.ncicb.tcga.dcc.io.api.event,
• gov.nih.nci.ncicb.tcga.dcc.io.api.event.message,
• gov.nih.nci.ncicb.tcga.dcc.io.api.graph,
• gov.nih.nci.ncicb.tcga.dcc.io.api.graph.util,
• gov.nih.nci.ncicb.tcga.dcc.io.api.handler,
• gov.nih.nci.ncicb.tcga.dcc.io.api.handler.event,
• gov.nih.nci.ncicb.tcga.dcc.io.api.handler.message,
• gov.nih.nci.ncicb.tcga.dcc.io.api.handler.traffic,
• gov.nih.nci.ncicb.tcga.dcc.io.api.lifecycle,
• gov.nih.nci.ncicb.tcga.dcc.io.api.scheduler,
• gov.nih.nci.ncicb.tcga.dcc.io.api.util,
• gov.nih.nci.ncicb.tcga.dcc.io.api.util.concurrent,
• gov.nih.nci.ncicb.tcga.dcc.io.api.util.nio,
• gov.nih.nci.ncicb.tcga.dcc.io.client,
• gov.nih.nci.ncicb.tcga.dcc.io.client.analytics,
• gov.nih.nci.ncicb.tcga.dcc.io.client.config,
• gov.nih.nci.ncicb.tcga.dcc.io.client.deltaencode,
• gov.nih.nci.ncicb.tcga.dcc.io.client.http,
• gov.nih.nci.ncicb.tcga.dcc.io.data,
• gov.nih.nci.ncicb.tcga.dcc.io.data.parser,
• gov.nih.nci.ncicb.tcga.dcc.io.server.api,
• gov.nih.nci.ncicb.tcga.dcc.io.server.api.config,
• gov.nih.nci.ncicb.tcga.dcc.io.server.api.embedded,
• gov.nih.nci.ncicb.tcga.dcc.io.server.api.scheduler,
• gov.nih.nci.ncicb.tcga.dcc.io.server.http.config,
• gov.nih.nci.ncicb.tcga.dcc.io.server.http.controller,
• gov.nih.nci.ncicb.tcga.dcc.io.server.http.handler,
• gov.nih.nci.ncicb.tcga.dcc.qclive,
• gov.nih.nci.ncicb.tcga.dcc.qclive.bean,
• gov.nih.nci.ncicb.tcga.dcc.qclive.common,
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.action,
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation,
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.remote,
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.util,
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.xml,
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging,
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.util,
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao,
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc,
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.remote,
• gov.nih.nci.ncicb.tcga.dcc.qclive.live,
• gov.nih.nci.ncicb.tcga.dcc.qclive.live.service,
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader,
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader.bamloader,
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader.clinical,
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree,
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.group.validation,
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record,
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file,
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file.segment,
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthreedata,
• gov.nih.nci.ncicb.tcga.dcc.qclive.service,
• gov.nih.nci.ncicb.tcga.dcc.qclive.soundcheck,
• gov.nih.nci.ncicb.tcga.dcc.qclive.standalone,
• gov.nih.nci.ncicb.tcga.dcc.qclive.util,
• gov.nih.nci.ncicb.tcga.dcc.qclive.web,
• gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.client,
• gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.client.impl,
• gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.util,
• gov.nih.nci.ncicb.tcga.dcc.test.integration,
• gov.nih.nci.ncicb.tcga.dcc.uuid.bean,
• gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws,
• gov.nih.nci.ncicb.tcga.dcc.uuid.constants,
• gov.nih.nci.ncicb.tcga.dcc.uuid.dao,
• gov.nih.nci.ncicb.tcga.dcc.uuid.dao.jdbc,
• gov.nih.nci.ncicb.tcga.dcc.uuid.service,
• gov.nih.nci.ncicb.tcga.dcc.uuid.web.controllers,
• gov.nih.nci.ncicb.tcga.dcc.uuid.web.json,
• gov.nih.nci.ncicb.tcga.dcc.uuid.webservice,
• gov.nih.nci.ncicb.tcga.dcc.uuid.webservice.bean,
• nci.tcga.bcr.xml.administration._2,
• nci.tcga.bcr.xml.biospecimen.shared._2,
• nci.tcga.bcr.xml.clinical.pharmaceutical._2,
• nci.tcga.bcr.xml.clinical.radiation._2,
• nci.tcga.bcr.xml.clinical.shared._2,
• nci.tcga.bcr.xml.utility._2,
• org.quartz.impl.jdbcjobstore

Class Hierarchy

• java.lang.Object
  • org.springframework.web.context.AbstractContextLoaderInitializer (implements org.springframework.web.WebApplicationInitializer)
    • org.springframework.web.servlet.support.AbstractDispatcherServletInitializer
      • org.springframework.web.servlet.support.AbstractAnnotationConfigDispatcherServletInitializer
        • gov.nih.nci.ncicb.tcga.dcc.io.server.http.config.WebApplicationInitializer
  • org.springframework.jdbc.datasource.AbstractDataSource (implements javax.sql.DataSource)
    • org.springframework.jdbc.datasource.lookup.AbstractRoutingDataSource (implements org.springframework.beans.factory.InitializingBean)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.RoutingDataSource (implements gov.nih.nci.ncicb.tcga.dcc.common.util.NameLister)
  • gov.nih.nci.ncicb.tcga.dcc.io.api.event.AbstractEventBuilder<B>
    • gov.nih.nci.ncicb.tcga.dcc.io.api.event.DefaultEventBuilder
  • gov.nih.nci.ncicb.tcga.dcc.io.api.handler.event.AbstractEventHandler<E> (implements com.lmax.disruptor.SequenceReportingEventHandler<T>)
    • gov.nih.nci.ncicb.tcga.dcc.io.api.handler.message.InboundMessageEventHandlerAdapter<I> (implements gov.nih.nci.ncicb.tcga.dcc.io.api.handler.message.InboundMessageHandler<I>)
    • gov.nih.nci.ncicb.tcga.dcc.io.api.handler.message.OutboundMessageEventHandlerAdapter<O> (implements gov.nih.nci.ncicb.tcga.dcc.io.api.handler.message.OutboundMessageHandler<O>)
  • gov.nih.nci.ncicb.tcga.dcc.io.api.graph.AbstractGraph<V,E> (implements gov.nih.nci.ncicb.tcga.dcc.io.api.graph.Graph<V,E>)
    • gov.nih.nci.ncicb.tcga.dcc.io.api.graph.DirectedGraph<V,E> (implements gov.nih.nci.ncicb.tcga.dcc.io.api.graph.Graph<V,E>)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.AbstractLoggerDestination (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.LoggerDestination)
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.EmailLoggerDestination
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.FileLoggerDestination
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.StdoutLoggerDestination
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • gov.nih.nci.ncicb.tcga.dcc.io.api.graph.util.SetMap<K,V>
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.AbstractProcessor<I,O> (implements gov.nih.nci.ncicb.tcga.dcc.ConstantValues, gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.Processor<T,S>)
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.AbstractArchiveFileProcessor<O>
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.AbstractMafFileVersionDispatcher<O>
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.MafFileProcessorDispatcher
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.MafFileValidatorDispatcher
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.AbstractSeqDataFileValidator
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.MiRNASeqDataFileValidator
          • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.MiRNASeqFileValidator
          • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.MiRNASeqIsoformFileValidator
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.RNASeqDataFileValidator
          • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.RNASeqExonFileValidator
          • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.RNASeqGeneFileValidator
          • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.RNASeqJunctionFileValidator
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.RNASeqRSEMValidator
          • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.RNASeqRSEMGeneNormalizedFileValidator
          • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.RNASeqRSEMGeneResultsFileValidator
          • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.RNASeqRSEMIsoformFileValidator
          • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.RNASeqRSEMIsoformNormalizedFileValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.BedFileValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.BiotabFileValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ClinicalDateObscurer
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ClinicalXmlProcessor
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.ProteinArrayLevelThreeDataFileValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.ProteinArrayLevelTwoDataFileValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.PurityPloidyFileValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.TraceFileProcessor
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.TraceFileValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.VcfProcessor
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.VcfValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.xml.XmlValidator
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.xml.AuxiliaryXmlValidator
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.xml.BiospecimenXmlValidator
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.xml.ClinicalXmlValidator
          • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.xml.ClinicalXmlDateValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.XSDSchemaValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.AbstractIdfValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.GccIdfValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.GscIdfValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.AbstractListProcessor<I,O,L,M>
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ExperimentArchiveProcessor
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ExperimentDeployer
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.ExperimentValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.AbstractMafFileHandler<O>
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.MafFileProcessor
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.Maf2FileProcessor
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.MafFileValidator
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.Maf2FileValidator
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.MafFileValidatorV2_4
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.RNASeqMafProcessor
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.RNASeqMafValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.remote.AbstractRemoteValidator<I>
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.remote.RemoteDomainNameValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.remote.RemotePlatformValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.remote.RemoteTumorTypeValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.AbstractSdrfHandler<I,O>
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.AbstractSdrfValidator
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.ArraySdrfValidator
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.DNASeqSdrfValidator
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.ProteinArraySdrfValidator
        • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.RnaSeqSdrfValidator
          • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.MiRnaSeqSdrfValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.AutoloaderCaller (implements java.io.Serializable)
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.MageTabExperimentValidator
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.SdrfProcessor
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.SdrfRewriter
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.AlteredFileListCreator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ArchiveDeployer
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.ArchiveExistenceValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ArchiveExpander
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ArchiveFileAdder
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ArchiveFileSaver
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.ArchiveNameValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ArchiveReadmeCreator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.ArchiveRevisionValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ArchiveSaver
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.ArchiveTypeValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.BCRBatchNumberValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.BcrExperimentFieldValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.BcrExperimentValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.BcrFilesExistenceValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.BiospecimenMetaDataProcessor
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ChangeLogCreator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.ControlArchiveValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.DataMatrixSplitter
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.DataMatrixValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.DiseaseTypeValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.DomainNameValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.DroppedBarcodeFinder
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ExperimentChecker
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.GscSerialIndexValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.MageTabExperimentChecker
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.ManifestValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.MD5Validator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.PlatformValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.PreviousArchiveFileCopier
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.ProteinArrayLevelTwoFileHeaderValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.SdrfValidatorDispatcher
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.UploadChecker
  • gov.nih.nci.ncicb.tcga.dcc.dam.dao.usage.AbstractUsageLogger (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.usage.UsageLoggerI)
    • gov.nih.nci.ncicb.tcga.dcc.dam.dao.usage.UsageLoggerFileImpl
    • gov.nih.nci.ncicb.tcga.dcc.dam.dao.usage.UsageLoggerJDBCImpl
  • gov.nih.nci.ncicb.tcga.dcc.dam.dao.usage.AbstractUsageLogger.UsageSession
  • gov.nih.nci.ncicb.tcga.dcc.dam.dao.usage.AbstractUsageLogger.UsageSessionAction
  • gov.nih.nci.ncicb.tcga.dcc.annotations.security.impl.AclSecurityControllerImpl (implements gov.nih.nci.ncicb.tcga.dcc.annotations.security.AclSecurityController)
  • gov.nih.nci.ncicb.tcga.dcc.common.security.impl.AclSecurityUtilImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.security.AclSecurityUtil)
  • nci.tcga.bcr.xml.clinical.shared._2.AdditionalPharmaceuticalTherapy
  • nci.tcga.bcr.xml.clinical.shared._2.AdditionalRadiationTherapy
  • nci.tcga.bcr.xml.administration._2.Admin
  • gov.nih.nci.ncicb.tcga.dcc.dam.web.AdminController (implements org.springframework.web.context.ServletContextAware)
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.AdminDataModel
  • nci.tcga.bcr.xml.administration._2.AdminResAttribute
    • nci.tcga.bcr.xml.administration._2.BatchNumber
    • nci.tcga.bcr.xml.administration._2.Bcr
    • nci.tcga.bcr.xml.administration._2.DiseaseCode
    • nci.tcga.bcr.xml.administration._2.TypeOfRedaction
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.AdminServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.service.AdminService)
  • nci.tcga.bcr.xml.clinical.shared._2.AgeBeganSmokingInYears
  • nci.tcga.bcr.xml.clinical.shared._2.AlcoholHistoryDocumented
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Aliquot
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.Aliquot
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.AliquotArchive
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.AliquotController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.AliquotIdBreakdown
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.AliquotIdBreakdownController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.json.AliquotIdBreakdownJsonController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.constants.AliquotIdBreakdownReportConstants
  • gov.nih.nci.ncicb.tcga.dcc.datareports.dao.jdbc.AliquotIdBreakdownReportDAOImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.dao.AliquotIdBreakdownReportDAO)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.service.AliquotIdBreakdownReportServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.service.AliquotIdBreakdownReportService)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.json.AliquotJsonController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.constants.AliquotReportConstants
  • gov.nih.nci.ncicb.tcga.dcc.datareports.dao.jdbc.AliquotReportDAOImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.dao.AliquotReportDAO)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.service.AliquotReportServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.service.AliquotReportService)
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Aliquots
  • gov.nih.nci.ncicb.tcga.dcc.bamloader.AliquotShort
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.AliquotsToDiseases
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.AliquotUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.datareports.webservice.AliquotWS
  • gov.nih.nci.ncicb.tcga.dcc.common.util.AlphanumComparator (implements java.util.Comparator<T>)
  • nci.tcga.bcr.xml.clinical.shared._2.AmountOfAlcoholConsumptionPerDay
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Analyte
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Analytes
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.validators.AnalyteTypeValidator (implements gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.BeanPropertyValidator)
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.AnalyteUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.annotations.webservice.AnnotationAddNoteWS
  • gov.nih.nci.ncicb.tcga.dcc.annotations.webservice.AnnotationAddWS
  • gov.nih.nci.ncicb.tcga.dcc.annotations.webservice.AnnotationContextResolver (implements javax.ws.rs.ext.ContextResolver<T>)
  • gov.nih.nci.ncicb.tcga.dcc.annotations.web.AnnotationControllerImpl (implements gov.nih.nci.ncicb.tcga.dcc.annotations.web.AnnotationController)
  • gov.nih.nci.ncicb.tcga.dcc.annotations.web.AnnotationExportControllerImpl (implements gov.nih.nci.ncicb.tcga.dcc.annotations.web.AnnotationExportController)
  • gov.nih.nci.ncicb.tcga.dcc.annotations.webservice.AnnotationNoteEditWS
  • gov.nih.nci.ncicb.tcga.dcc.annotations.web.AnnotationRssController
  • gov.nih.nci.ncicb.tcga.dcc.annotations.service.AnnotationRssServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.annotations.service.AnnotationRssService)
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.annotations.AnnotationSearchCriteria
  • gov.nih.nci.ncicb.tcga.dcc.common.service.annotations.AnnotationServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.service.annotations.AnnotationService)
  • gov.nih.nci.ncicb.tcga.dcc.annotations.webservice.AnnotationsSearchWS
  • gov.nih.nci.ncicb.tcga.dcc.annotations.webservice.AnnotationViewWS
  • org.springframework.context.support.ApplicationObjectSupport (implements org.springframework.context.ApplicationContextAware)
    • org.springframework.web.context.support.WebApplicationObjectSupport (implements org.springframework.web.context.ServletContextAware)
      • org.springframework.web.servlet.view.AbstractView (implements org.springframework.beans.factory.BeanNameAware, org.springframework.web.servlet.View)
        • org.springframework.web.servlet.view.document.AbstractJExcelView
          • gov.nih.nci.ncicb.tcga.dcc.common.web.view.TCGAExcelView
        • gov.nih.nci.ncicb.tcga.dcc.annotations.web.view.AnnotationRssView
        • gov.nih.nci.ncicb.tcga.dcc.common.web.view.TCGAExcelSXSSView
        • gov.nih.nci.ncicb.tcga.dcc.common.web.view.TCGATextView
      • org.springframework.web.servlet.support.WebContentGenerator
        • org.springframework.web.servlet.mvc.AbstractController (implements org.springframework.web.servlet.mvc.Controller)
          • org.springframework.web.servlet.mvc.BaseCommandController
            • org.springframework.web.servlet.mvc.AbstractCommandController
              • gov.nih.nci.ncicb.tcga.dcc.dam.web.AnotherFileInfoController
              • gov.nih.nci.ncicb.tcga.dcc.dam.web.LatestArchivesController
              • gov.nih.nci.ncicb.tcga.dcc.dam.web.WebController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.DataAccessDownloadController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.DataAccessExternalFilterConstantsController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.DataAccessExternalFilterController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.DataAccessFileProcessingController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.DataAccessMatrixColorSchemeController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.DataAccessMatrixController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.DataAccessMatrixSelectorController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.DataAccessResultPollingController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.HomepageController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.NewspageController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.PlatformpageController
            • org.springframework.web.servlet.mvc.AbstractFormController
              • org.springframework.web.servlet.mvc.SimpleFormController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.ArchiveFormController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.FileInfoFormController
                • gov.nih.nci.ncicb.tcga.dcc.dam.web.LogFormController
          • org.springframework.web.servlet.mvc.multiaction.MultiActionController (implements org.springframework.web.servlet.mvc.LastModified)
            • gov.nih.nci.ncicb.tcga.dcc.dam.web.ArchiveController (implements org.springframework.beans.factory.InitializingBean)
            • gov.nih.nci.ncicb.tcga.dcc.dam.web.FileInfoController (implements org.springframework.beans.factory.InitializingBean)
            • gov.nih.nci.ncicb.tcga.dcc.dam.web.LogController (implements org.springframework.beans.factory.InitializingBean)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.ArchiveBase (implements java.io.Serializable)
    • gov.nih.nci.ncicb.tcga.dcc.common.bean.Archive
      • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.Maf
      • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.Sdrf
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.ArchiveCompressorTarGzImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.ArchiveCompressor)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.ArchiveCompressorZipImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.ArchiveCompressor)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.standalone.ArchiveCopyStandalone
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.ArchiveDeletionBean (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.ArchiveDeletionJob (implements gov.nih.nci.ncicb.tcga.dcc.dam.service.QueueJob<J>)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.ArchiveInfo
  • gov.nih.nci.ncicb.tcga.dcc.dam.web.ArchiveListerController
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.ArchiveListerServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.service.ArchiveListerService)
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.ArchiveListInfo
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.ArchiveListLink
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.ArchiveLoggerImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.ArchiveLogger)
  • gov.nih.nci.ncicb.tcga.dcc.common.web.ArchiveQueryRequest
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.ArchiveType (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.ArchiveUtilImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.ArchiveUtil)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.webservice.ArchiveWS
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.bam.BamAliquot
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.bam.BamCGHubCenter
  • BAMCommandLineLoader
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.bam.BamContext
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.bam.BamDatatype
  • gov.nih.nci.ncicb.tcga.dcc.bamloader.BAMDatatype
  • gov.nih.nci.ncicb.tcga.dcc.bamloader.BAMFile
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.bamloader.BAMLoader
  • gov.nih.nci.ncicb.tcga.dcc.bamloader.BAMLoaderConstants
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.bamloader.BAMLoaderSchedulerJob (implements org.quartz.Job)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.bamloader.BAMParser
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.bam.BamTelemetry
    • gov.nih.nci.ncicb.tcga.dcc.common.bean.bam.BamXmlResult
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.bamloader.BAMValidator
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.bam.BamXmlFileRef
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.bam.BamXmlResultSet
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.Barcode (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.common.webservice.bean.BarcodeListWS (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.BarcodeTumorValidatorImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.BarcodeTumorValidator)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.BarcodeUuidResolverImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.BarcodeUuidResolver)
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.BarcodeUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.validators.BarcodeValidator (implements gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.BeanPropertyValidator)
  • gov.nih.nci.ncicb.tcga.dcc.common.webservice.bean.BarcodeWS
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.BareBonesLogger (implements gov.nih.nci.ncicb.tcga.dcc.common.util.ProcessLoggerI)
  • org.sadun.util.polling.BasePollManager (implements org.sadun.util.polling.PollManager)
    • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.TCGAPollManagerService
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.BatchNumberAssignment (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.BcrAliquotBarcode
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.BcrAnalyteBarcode
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.BcrBatchCode
  • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.BCRDataServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.BCRDataService)
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.BcrDrugBarcode
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.BcrDrugUuid
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.BcrExaminationBarcode
  • nci.tcga.bcr.xml.clinical.shared._2.BcrExaminationBarcode
  • nci.tcga.bcr.xml.clinical.shared._2.BcrFollowupBarcode
  • nci.tcga.bcr.xml.clinical.shared._2.BcrFollowupUuid
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.BCRID
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.BCRIDProcessorImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.BCRIDProcessor)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.BCRJson
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.BcrPatientBarcode
  • nci.tcga.bcr.xml.clinical.shared._2.BcrPatientBarcode
  • nci.tcga.bcr.xml.clinical.shared._2.BcrPatientUuid
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.json.BCRPipelineJsonController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.constants.BCRPipelineReportConstants
  • gov.nih.nci.ncicb.tcga.dcc.datareports.service.BCRPipelineReportServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.service.BCRPipelineReportService)
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.BcrPortionBarcode
  • nci.tcga.bcr.xml.clinical.radiation._2.BcrRadiationBarcode
  • nci.tcga.bcr.xml.clinical.radiation._2.BcrRadiationUuid
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.BcrSampleBarcode
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.BcrSlideBarcode
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.BcrSurgeryBarcode
  • gov.nih.nci.ncicb.tcga.dcc.dam.util.BCRUtil
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.BCRUtilsImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.BCRUtils)
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.BcrUuid
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.BCRUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.validators.BCRValidator (implements gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.BeanPropertyValidator)
  • gov.nih.nci.ncicb.tcga.dcc.common.generation.BcrXMLFileParser
  • gov.nih.nci.ncicb.tcga.dcc.common.util.BCRXMLFileReader
  • gov.nih.nci.ncicb.tcga.dcc.common.util.BeanToTextExporter
  • gov.nih.nci.ncicb.tcga.dcc.common.util.BigDecimalConversions
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.Biospecimen
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.BiospecimenHelper
  • gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.client.impl.BiospecimenIdWsQueriesImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.client.BiospecimenIdWsQueries)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.BiospecimenInfo
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.BiospecimenMetaData
  • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.BiospecimenMetadataPlatformsJob (implements org.quartz.Job)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.BiospecimenToFile
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.BiotabData
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.BioTabDataBean
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.BioTabDataBean.BioTabData
  • gov.nih.nci.ncicb.tcga.dcc.common.generation.BioTabDataProcessorUtil
  • gov.nih.nci.ncicb.tcga.dcc.common.generation.BioTabFileGenerator (implements gov.nih.nci.ncicb.tcga.dcc.common.generation.FileGenerator)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.BiotabGeneratorJob (implements org.quartz.Job)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.BiotabSchedulerJob (implements org.quartz.Job)
  • gov.nih.nci.ncicb.tcga.dcc.uuid.web.controllers.BrowserHomePageController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.fusioncharts.BubbleXYZ
  • gov.nih.nci.ncicb.tcga.dcc.uuid.web.controllers.CacheAdminController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.CacheAdminController
  • gov.nih.nci.ncicb.tcga.dcc.common.aspect.cache.CacheAspect
  • gov.nih.nci.ncicb.tcga.dcc.dam.processors.CachedOutputManager
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.fusioncharts.Category
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.Cell
  • gov.nih.nci.ncicb.tcga.dcc.qclive.standalone.CellLineBiospecimenIdLoader
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.Center (implements java.io.Serializable)
    • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.CenterCode
    • gov.nih.nci.ncicb.tcga.dcc.bamloader.CenterShort
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.CenterId
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.CenterPlatformPattern
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.CenterQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.CenterQueries)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.email.CenterSampleReportGeneratorImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.email.CenterSampleReportGenerator)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.CenterToBCRCenter (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.CenterUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.validators.CenterValidator (implements gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.BeanPropertyValidator)
  • io.netty.channel.ChannelHandlerAdapter (implements io.netty.channel.ChannelHandler)
    • io.netty.channel.ChannelInboundHandlerAdapter (implements io.netty.channel.ChannelInboundHandler)
      • io.netty.handler.codec.ByteToMessageDecoder
        • io.netty.handler.codec.LengthFieldBasedFrameDecoder
          • gov.nih.nci.ncicb.tcga.dcc.io.api.codec.kryo.Kryo01FrameDecoder
        • io.netty.handler.codec.ReplayingDecoder<S>
          • gov.nih.nci.ncicb.tcga.dcc.io.api.codec.kryo.Kryo02FrameDecoder
      • io.netty.handler.codec.MessageToMessageDecoder<I>
        • gov.nih.nci.ncicb.tcga.dcc.io.api.codec.http.HttpContentExtractor
      • io.netty.channel.SimpleChannelInboundHandler<I>
        • gov.nih.nci.ncicb.tcga.dcc.io.client.deltaencode.DeltaEncode01ClientHandler
        • gov.nih.nci.ncicb.tcga.dcc.io.client.deltaencode.DeltaEncode02ClientHandler
        • gov.nih.nci.ncicb.tcga.dcc.io.server.http.handler.DeltaEncodeServerHandler
        • gov.nih.nci.ncicb.tcga.dcc.io.api.handler.DiscardHandler
        • gov.nih.nci.ncicb.tcga.dcc.io.api.handler.traffic.ProgressMonitor
        • gov.nih.nci.ncicb.tcga.dcc.io.server.http.handler.TelemetryDataHandler
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.fusioncharts.Chart
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.fusioncharts.ChartDataRow
  • nci.tcga.bcr.xml.clinical.shared._2.ChemoTherapy
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.ChromInfo
  • gov.nih.nci.ncicb.tcga.dcc.qclive.util.ChromInfoUtilsImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.util.ChromInfoUtils)
    • gov.nih.nci.ncicb.tcga.dcc.qclive.util.ChromInfoUtilsSoundCheckImpl
  • gov.nih.nci.ncicb.tcga.dcc.common.util.ClassVersionChecker
  • gov.nih.nci.ncicb.tcga.dcc.io.client.config.ClientMetricsConfig
  • gov.nih.nci.ncicb.tcga.dcc.io.client.config.ClientPersistenceConfig
  • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.ClinicalBean
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.Aliquot
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.Analyte
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.DiseaseSlide
      • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.GBMSlide
      • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.LungSlide
      • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.OvarianSlide
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.DNA
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.Drug
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.Examination
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.Pathology
      • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.GBMPathology
      • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.LungPathology
      • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.OvarianPathology
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.Patient
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.Portion
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.Protocol
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.Radiation
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.RNA
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.Sample
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.Slide
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.Surgery
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.TumorPathology
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ClinicalLoaderCaller (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ArchiveLoader)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.ClinicalLoaderJob (implements org.quartz.StatefulJob)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.clinical.ClinicalLoaderStandalone
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.ClinicalMetaQueries.ClinicalFile
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.ClinicalMetaQueries.ClinicalFileColumn
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.clinical.ClinicalObject
  • nci.tcga.bcr.xml.utility._2.ClinicalResAttributes
    • nci.tcga.bcr.xml.clinical.shared._2.AdditionalTreatmentCompletionSuccessOutcome
    • nci.tcga.bcr.xml.clinical.shared._2.AgeAtInitialPathologicDiagnosis
    • nci.tcga.bcr.xml.clinical.shared._2.AnatomicNeoplasmSubdivision
    • nci.tcga.bcr.xml.clinical.shared._2.AnatomicNeoplasmSubdivisionOther
    • nci.tcga.bcr.xml.clinical.radiation._2.AnatomicTreatmentSite
    • nci.tcga.bcr.xml.clinical.shared._2.CountryOfOrigin
    • nci.tcga.bcr.xml.clinical.shared._2.DaysToBirth
    • nci.tcga.bcr.xml.clinical.shared._2.DaysToDeath
    • nci.tcga.bcr.xml.clinical.pharmaceutical._2.DaysToDrugTherapyEnd
    • nci.tcga.bcr.xml.clinical.pharmaceutical._2.DaysToDrugTherapyStart
    • nci.tcga.bcr.xml.clinical.shared._2.DaysToFormCompletion
    • nci.tcga.bcr.xml.clinical.shared._2.DaysToInitialPathologicDiagnosis
    • nci.tcga.bcr.xml.clinical.shared._2.DaysToLastFollowup
    • nci.tcga.bcr.xml.clinical.shared._2.DaysToLastKnownAlive
    • nci.tcga.bcr.xml.clinical.shared._2.DaysToPerformanceStatusFollowUpScore
    • nci.tcga.bcr.xml.clinical.radiation._2.DaysToRadiationTherapyEnd
    • nci.tcga.bcr.xml.clinical.radiation._2.DaysToRadiationTherapyStart
    • nci.tcga.bcr.xml.clinical.shared._2.DaysToTumorProgression
    • nci.tcga.bcr.xml.clinical.shared._2.DaysToTumorRecurrence
    • nci.tcga.bcr.xml.clinical.shared._2.EasternCancerOncologyGroup
    • nci.tcga.bcr.xml.clinical.shared._2.Ethnicity
    • nci.tcga.bcr.xml.clinical.shared._2.FollowupCaseReportFormSubmissionReason
    • nci.tcga.bcr.xml.clinical.shared._2.FollowupTreatmentSuccess
    • nci.tcga.bcr.xml.clinical.shared._2.Gender
    • nci.tcga.bcr.xml.clinical.shared._2.Height
    • nci.tcga.bcr.xml.clinical.shared._2.HistologicalType
    • nci.tcga.bcr.xml.clinical.shared._2.HistoryOfNeoadjuvantTreatment
    • nci.tcga.bcr.xml.clinical.shared._2.Icd10
    • nci.tcga.bcr.xml.clinical.shared._2.IcdO3Histology
    • nci.tcga.bcr.xml.clinical.shared._2.IcdO3Site
    • nci.tcga.bcr.xml.clinical.shared._2.InformedConsentVerified
    • nci.tcga.bcr.xml.clinical.shared._2.InitialPathologicDiagnosisMethod
    • nci.tcga.bcr.xml.clinical.shared._2.KarnofskyPerformanceScore
    • nci.tcga.bcr.xml.clinical.shared._2.LactateDehydrogenaseResult
    • nci.tcga.bcr.xml.clinical.shared._2.Laterality
    • nci.tcga.bcr.xml.clinical.shared._2.MarginStatus
    • nci.tcga.bcr.xml.clinical.shared._2.MeasureOfResponse
    • nci.tcga.bcr.xml.clinical.shared._2.MenopauseStatus
    • nci.tcga.bcr.xml.clinical.shared._2.MetastaticSiteAtDiagnosis
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.MononucleotideAndDinucleotideMarkerPanelAnalysisStatus
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.MononucleotideMarkerPanelAnalysisStatus
    • nci.tcga.bcr.xml.clinical.shared._2.NeoplasmHistologicGrade
    • nci.tcga.bcr.xml.clinical.radiation._2.Numfractions
    • nci.tcga.bcr.xml.clinical.shared._2.PatientDeathReason
    • nci.tcga.bcr.xml.clinical.shared._2.PerformanceStatusScaleTiming
    • nci.tcga.bcr.xml.clinical.shared._2.PersonNeoplasmCancerStatus
    • nci.tcga.bcr.xml.clinical.shared._2.PostSurgicalProcedureAssessmentThyroidGlandCarcinomaStatus
    • nci.tcga.bcr.xml.clinical.shared._2.PrimaryTherapyOutcomeSuccess
    • nci.tcga.bcr.xml.clinical.shared._2.PriorDx
    • nci.tcga.bcr.xml.clinical.shared._2.ProgressionDeterminedByNotes
    • nci.tcga.bcr.xml.clinical.shared._2.Race
    • nci.tcga.bcr.xml.clinical.radiation._2.RadiationDosage
    • nci.tcga.bcr.xml.clinical.radiation._2.RadiationType
    • nci.tcga.bcr.xml.clinical.shared._2.RegimenIndication
    • nci.tcga.bcr.xml.clinical.shared._2.RegimenIndicationNotes
    • nci.tcga.bcr.xml.clinical.shared._2.ResidualTumor
    • nci.tcga.bcr.xml.clinical.pharmaceutical._2.RouteOfAdministration
    • nci.tcga.bcr.xml.clinical.shared._2.SiteOfTumorFirstRecurrence
    • nci.tcga.bcr.xml.clinical.pharmaceutical._2.TherapyType
    • nci.tcga.bcr.xml.clinical.pharmaceutical._2.TherapyTypeNotes
    • nci.tcga.bcr.xml.clinical.shared._2.TobaccoSmokingHistory
    • nci.tcga.bcr.xml.clinical.shared._2.TumorResidualDisease
    • nci.tcga.bcr.xml.clinical.shared._2.TumorTissueSite
    • nci.tcga.bcr.xml.clinical.radiation._2.Units
    • nci.tcga.bcr.xml.clinical.shared._2.VitalStatus
    • nci.tcga.bcr.xml.clinical.shared._2.Weight
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.clinical.ClinicalTable
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.ClinicalTrailDrugClassification
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.CnaValue
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.CodeReport
    • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.TissueSourceSite
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.CodeTableQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.CodeTableQueries)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.CodeTablesController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.json.CodeTablesJsonController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.constants.CodeTablesReportConstants
  • gov.nih.nci.ncicb.tcga.dcc.datareports.dao.jdbc.CodeTablesReportDAOImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.dao.CodeTablesReportDAO)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.service.CodeTablesReportServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.service.CodeTablesReportService)
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.request.ColorSchemeRequest
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.CommandLineFileTypeLookup (implements gov.nih.nci.ncicb.tcga.dcc.common.service.FileTypeLookup)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.CommandLineLoader
  • gov.nih.nci.ncicb.tcga.dcc.common.util.CommonBarcodeAndUUIDValidatorImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.util.CommonBarcodeAndUUIDValidator)
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.QcLiveBarcodeAndUUIDValidatorImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.QcLiveBarcodeAndUUIDValidator)
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.QcLiveBarcodeAndUUIDValidatorRemoteImpl
  • gov.nih.nci.ncicb.tcga.dcc.common.service.CommonQmsServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.service.CommonQmsService)
    • gov.nih.nci.ncicb.tcga.dcc.dam.service.DAMQMSServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.service.DAMQMSService)
  • nci.tcga.bcr.xml.utility._2.CommonResAttributes
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.AnalyteType
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.AnalyteTypeId
    • nci.tcga.bcr.xml.biospecimen.shared._2.OtherMethodOfSampleProcurement
    • nci.tcga.bcr.xml.clinical.shared._2.PatientId
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.PlateId
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.SampleType
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.SampleTypeId
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.SectionLocation
    • nci.tcga.bcr.xml.clinical.shared._2.TissueSourceSite
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.VialNumber
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.ConstructedFileBean
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.ContextHolder
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Control
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Controls
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.bcrpipeline.Count
  • nci.tcga.bcr.xml.clinical.radiation._2.CourseNumber
  • gov.nih.nci.ncicb.tcga.dcc.qclive.util.CutColumns
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.request.DADRequest
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.request.DAFPRequest
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.request.DAFPSecondaryRequest
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.DAFPViewItems
  • gov.nih.nci.ncicb.tcga.dcc.dam.web.editor.DAMBindingInitializer (implements org.springframework.web.bind.support.WebBindingInitializer)
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMColorScheme
    • gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMDefaultColorScheme
    • gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMTumorNormalColorScheme
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMFacade (implements gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMFacadeI)
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMFilterModel (implements gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMModel)
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMHelper (implements gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMHelperI)
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DAMJobStatus
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.DAMJobStatusServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.service.DAMJobStatusService)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.DAMQMSRecord
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.DamQmsReportAdminController
  • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesFacade (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataAccessMatrixQueries)
  • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesStats (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesStatsI)
  • gov.nih.nci.ncicb.tcga.dcc.dam.util.DAMResourceBundle
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMSelectionModel
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMStaticModel (implements gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMModel)
  • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMUtils (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMUtilsI)
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DAMWebServiceJobStatus
  • gov.nih.nci.ncicb.tcga.dcc.dam.webservice.DAMWSUtil (implements java.io.Serializable)
  • org.springframework.dao.support.DaoSupport (implements org.springframework.beans.factory.InitializingBean)
    • org.springframework.jdbc.core.support.JdbcDaoSupport
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.ArchiveQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.ArchiveQueries)
      • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.ArchiveTypeQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.ArchiveTypeQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.BaseQueriesProcessor
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.ArchiveQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.ArchiveQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.ArchiveTypeQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.ArchiveTypeQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.BatchNumberQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.BatchNumberQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.BCRIDQueriesImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.BCRIDQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.ChromInfoQueriesImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.ChromInfoQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.ClinicalLoaderQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.ClinicalLoaderQueries)
        • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMBaseQueriesProcessor
          • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesCGCCLevelTwoAndThree (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataAccessMatrixQueries)
            • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesLevel2 (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataAccessMatrixQueries)
            • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesLevel3 (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataAccessMatrixQueries)
              • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesLevel3CNA_SNP
              • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesLevel3ExpGene
              • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesLevel3Methylation
              • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesLevel3miRnaSeq
              • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesLevel3ProteinExp
              • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesLevel3RnaSeq
          • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesCGCCLevelTwoThreeList
          • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesClinicalBiotab (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataAccessMatrixQueries)
          • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesClinicalXML (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataAccessMatrixQueries)
          • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesFilesystem (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataAccessMatrixQueries)
            • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesCGCCLevel1 (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMSubmittedSampleI)
            • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesGscVcf
            • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesLevelThreeFilesystemImpl
          • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesMetadata (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataAccessMatrixQueries)
          • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesMutation (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataAccessMatrixQueries)
          • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesTrace (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataAccessMatrixQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.DataTypeQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.DataTypeQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.ExperimentQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.ExperimentQueries)
          • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.ExperimentQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.ExperimentQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.FileArchiveQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.FileArchiveQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.FileCollectionQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.FileCollectionQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.FileInfoQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.FileInfoQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.LoaderQueriesJdbcImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.loader.LoaderQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.LogQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.LogQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.MafInfoQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.MafInfoQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.MVRefreshQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.MVRefreshQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.PlatformQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.PlatformQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.TissueSourceSiteQueriesImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.TissueSourceSiteQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.TraceInfoQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.TraceInfoQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.TraceRelationshipQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.TraceRelationshipQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.TumorQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.TumorQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.VisibilityQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.VisibilityQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.BatchNumberQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.BatchNumberQueries)
      • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.BCRIDQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.BCRIDQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.CenterQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.CenterQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.ClientDataStoreJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.ClientDataStoreQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.CodeTableQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.CodeTableQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.ControlQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.ControlQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.DAMQMSQueriesImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.DAMQMSQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.DataTypeQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.DataTypeQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.DiseaseQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.TumorQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.FileInfoQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.FileInfoQueries)
      • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.LevelThreeQueriesImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.LevelThreeQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.PlatformQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.PlatformQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.ProjectDAOClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.ProjectDAO)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.ProjectDAOImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.ProjectDAO)
      • gov.nih.nci.ncicb.tcga.dcc.dam.dao.jdbc.QuartzJobHistoryQueriesImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.QuartzJobHistoryQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.SampleTypeQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.SampleTypeQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.ServerDataStoreQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.ServerDataStoreQueries)
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.ShippedBiospecimenQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.ShippedBiospecimenQueries)
      • org.springframework.jdbc.core.simple.SimpleJdbcDaoSupport
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.annotations.AnnotationQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.annotations.AnnotationQueries)
        • gov.nih.nci.ncicb.tcga.dcc.dam.dao.jdbc.ArchiveListerQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.ArchiveListerQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.BAMFileQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.BAMFileQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.ClinicalMetaQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.ClinicalMetaQueries)
        • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMDiseaseQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMDiseaseQueries)
        • gov.nih.nci.ncicb.tcga.dcc.dam.dao.jdbc.DataTypeCountQueriesImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataTypeCountQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.DccPropertyQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.DccPropertyQueries)
        • gov.nih.nci.ncicb.tcga.dcc.dam.dao.jdbc.HomePageStatsQueriesImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.HomePageStatsQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.PortionAnalyteQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.PortionAnalyteQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.QcLiveShippedBiospecimenQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.QcLiveShippedBiospecimenQueries)
        • gov.nih.nci.ncicb.tcga.dcc.dam.dao.jdbc.QuartzQueueJobDetailsQueriesImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.QuartzQueueJobDetailsQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.RedactionQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.RedactionQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.SampleTypeQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.SampleTypeQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.ShippedBiospecimenQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.ShippedBiospecimenQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.TissueSourceSiteQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.TissueSourceSiteQueries)
        • gov.nih.nci.ncicb.tcga.dcc.dam.dao.jdbc.TumorMainCountQueriesImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.dao.TumorMainCountQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.UUIDHierarchyQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.UUIDHierarchyQueries)
        • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.UUIDTypeQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.UUIDTypeQueries)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.VcfHeaderDefinitionQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.VcfHeaderDefinitionQueries)
      • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.TissueSourceSiteQueriesClientImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.TissueSourceSiteQueries)
      • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.VisibilityQueriesClientJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.VisibilityQueries)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.fusioncharts.Data
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.DataAccessDownloadModel
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.DataAccessDownloadModel.TreeNode
  • gov.nih.nci.ncicb.tcga.dcc.dam.util.DataAccessMatrixJSPUtil
  • gov.nih.nci.ncicb.tcga.dcc.common.levelthreedata.bean.DataColumnMapping
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.DataColumnsOrder
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.DataFile
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataFile (implements java.lang.Comparable<T>, java.io.Serializable)
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataFileClinical
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataFileGscVcf
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataFileLevelOne
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataFileLevelThreeFilesystem
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataFileLevelTwoThree
      • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataFileLevelThreeDb
      • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataFileLevelTwo (implements java.lang.Comparable<T>)
        • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataFileLevelTwoConsolidated
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataFileMetadata
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataFileMutation
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataFileTrace
  • gov.nih.nci.cbiit.tcga.dcc.common.jaxb.generated.levelthreedata.DataMappingType
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.DataMatrix
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.DataMatrixParser
  • gov.nih.nci.ncicb.tcga.dcc.dam.web.DataMatrixStatusRequestController
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.DataNode
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.DatareportsBasicController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.constants.DatareportsCommonConstants
  • gov.nih.nci.ncicb.tcga.dcc.datareports.constants.DatareportsProperties
  • gov.nih.nci.ncicb.tcga.dcc.datareports.service.DatareportsServiceImpl<X> (implements gov.nih.nci.ncicb.tcga.dcc.datareports.service.DatareportsService<X>)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.fusioncharts.Dataset
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataSet
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataSetClinical
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataSetGscVcf
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataSetLevelOne
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataSetLevelTwoThree
      • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataSetLevelThreeFilesystem
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataSetMutation
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataSetStats
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.DataSetTrace
  • gov.nih.nci.ncicb.tcga.dcc.dam.util.DataSetReducer (implements gov.nih.nci.ncicb.tcga.dcc.dam.util.DataSetReducerI)
  • gov.nih.nci.ncicb.tcga.dcc.dam.util.DataSetSorterAndGapFiller (implements gov.nih.nci.ncicb.tcga.dcc.dam.util.DataSorterAndGapFillerI)
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.DataSourceMakerUtil
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.DataStoreEntity<K,V> (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.data.datastore.server.DataStoreServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.data.datastore.DataStoreService, gov.nih.nci.ncicb.tcga.dcc.common.service.JDBCCallback)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.DataSummary
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.DataType (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.DataType
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.stats.DataTypeCount (implements java.lang.Comparable<T>)
  • gov.nih.nci.ncicb.tcga.dcc.dam.webservice.DataTypeCountJAXBContextResolver (implements javax.ws.rs.ext.ContextResolver<T>)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.DataVisibility (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.DateComparator
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.DateUtils
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.validators.DateValidator (implements gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.BeanPropertyValidator)
  • nci.tcga.bcr.xml.clinical.shared._2.DayOfBirth
  • nci.tcga.bcr.xml.administration._2.DayOfDccUpload
  • nci.tcga.bcr.xml.clinical.shared._2.DayOfDeath
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.DayOfDrugTherapyEnd
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.DayOfDrugTherapyStart
  • nci.tcga.bcr.xml.clinical.shared._2.DayOfFormCompletion
  • nci.tcga.bcr.xml.clinical.shared._2.DayOfInitialPathologicDiagnosis
  • nci.tcga.bcr.xml.clinical.shared._2.DayOfLastFollowup
  • nci.tcga.bcr.xml.clinical.shared._2.DayOfLastKnownAlive
  • nci.tcga.bcr.xml.clinical.shared._2.DayOfPerformanceStatusFollowUpScore
  • nci.tcga.bcr.xml.clinical.radiation._2.DayOfRadiationTherapyEnd
  • nci.tcga.bcr.xml.clinical.radiation._2.DayOfRadiationTherapyStart
  • nci.tcga.bcr.xml.clinical.shared._2.DayOfTumorProgression
  • nci.tcga.bcr.xml.clinical.shared._2.DayOfTumorRecurrence
  • nci.tcga.bcr.xml.administration._2.DaysToDccUpload
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.DccAnnotation
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.DccAnnotationCategory (implements java.lang.Comparable<T>)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.DccAnnotationClassification (implements java.lang.Comparable<T>)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.DccAnnotationItem
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.DccAnnotationItemType
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.DccAnnotationNote
  • gov.nih.nci.ncicb.tcga.dcc.common.security.DccAnnotationNoteRetrievalStrategy (implements org.springframework.security.acls.model.ObjectIdentityRetrievalStrategy)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.DccProperty
  • gov.nih.nci.ncicb.tcga.dcc.io.api.event.DefaultEventContext (implements gov.nih.nci.ncicb.tcga.dcc.io.api.event.EventContext)
  • gov.nih.nci.ncicb.tcga.dcc.io.client.http.DefaultHttpClient (implements gov.nih.nci.ncicb.tcga.dcc.io.client.http.HttpClient)
  • gov.nih.nci.ncicb.tcga.dcc.io.api.handler.message.DefaultMessageHandlerContext (implements gov.nih.nci.ncicb.tcga.dcc.io.api.handler.message.MessageHandlerContext, java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.io.client.deltaencode.DeltaEncodeClient (implements gov.nih.nci.ncicb.tcga.dcc.io.client.Client<T>)
  • gov.nih.nci.ncicb.tcga.dcc.io.api.domain.protocol.DeltaEncodeRequest (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.io.server.api.scheduler.DeltaSyncJob (implements java.lang.Runnable)
  • nci.tcga.bcr.xml.clinical.shared._2.DiagnosisAge
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.DirectoryListerImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.DirectoryLister)
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.Disease (implements java.lang.Comparable<T>)
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.DiseaseData
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.DiseaseSpecificData
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.DiseaseUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.validators.DispatcherValidator
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.DownloadNCBITraceXML
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Drug
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.Drug
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.DrugName
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Drugs
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.Drugs
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.DrugUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.DummyFileTypeLookup (implements gov.nih.nci.ncicb.tcga.dcc.common.service.FileTypeLookup)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.ElementConstraintValidator (implements javax.validation.ConstraintValidator<A,T>)
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.Elements
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.ElementsToBeIncluded
  • gov.nih.nci.ncicb.tcga.dcc.common.util.EmailManager
  • gov.nih.nci.ncicb.tcga.dcc.io.server.api.config.EmbeddedServerConfig
  • gov.nih.nci.ncicb.tcga.dcc.io.api.domain.analytics.Environment (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.common.exception.ErrorInfo
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.ErrorInfo
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.ErrorInfo.ErrorHandlerParameters
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Examination
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Examinations
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.ExaminationUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.Experiment
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.ExperimentCenterBean
  • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.ExperimentCheckerJob (implements org.quartz.StatefulJob)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.ExperimentDAOImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.ExperimentDAO)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.remote.ExperimentQueriesRemoteImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.dao.ExperimentQueries)
  • gov.nih.nci.ncicb.tcga.dcc.common.util.ExportUtils
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.ExtJsFilter
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.ExtJsFilter
  • gov.nih.nci.ncicb.tcga.dcc.common.util.FancyExceptionLogger
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.FileCollection
  • gov.nih.nci.ncicb.tcga.dcc.common.levelthreedata.bean.FileColumnHeader
  • gov.nih.nci.cbiit.tcga.dcc.common.jaxb.generated.levelthreedata.FileColumnHeaderNameType
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.FileCopier
  • gov.nih.nci.ncicb.tcga.dcc.data.datastore.FileDataStoreConfig (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.data.datastore.FileDataStoreImpl (implements gov.nih.nci.ncicb.tcga.dcc.data.datastore.FileDataStore)
  • gov.nih.nci.ncicb.tcga.dcc.common.levelthreedata.bean.FileHeader
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.FileInfo (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.common.web.FileInfoQueryRequest
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.FileListReader
  • gov.nih.nci.ncicb.tcga.dcc.dam.processors.FilePackager (implements gov.nih.nci.ncicb.tcga.dcc.dam.processors.FilePackagerI)
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.FilePackagerBean (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.FilePackagerEnqueuer (implements gov.nih.nci.ncicb.tcga.dcc.dam.service.FilePackagerEnqueuerI)
  • gov.nih.nci.ncicb.tcga.dcc.dam.processors.FilePackagerFactory (implements gov.nih.nci.ncicb.tcga.dcc.dam.processors.FilePackagerFactoryI)
    • gov.nih.nci.ncicb.tcga.dcc.dam.webservice.WSFilePackagerFactory
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.FilePackagerJob (implements gov.nih.nci.ncicb.tcga.dcc.dam.service.QueueJob<J>)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.FileToArchive
  • gov.nih.nci.ncicb.tcga.dcc.common.levelthreedata.bean.FileToDBMapping
  • gov.nih.nci.cbiit.tcga.dcc.common.jaxb.generated.levelthreedata.FileToDBMappingType
  • gov.nih.nci.ncicb.tcga.dcc.common.service.FileTypeLookupFromMap (implements gov.nih.nci.ncicb.tcga.dcc.common.service.FileTypeLookup)
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.FileUploadBean
  • gov.nih.nci.ncicb.tcga.dcc.common.util.FileUtil
  • gov.nih.nci.ncicb.tcga.dcc.io.api.util.nio.FileUtil
  • gov.nih.nci.ncicb.tcga.dcc.common.levelthreedata.bean.Filter
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.FilterChoices
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.request.FilterRequest (implements gov.nih.nci.ncicb.tcga.dcc.dam.view.request.FilterRequestI, java.io.Serializable)
    • gov.nih.nci.ncicb.tcga.dcc.dam.webservice.WSFilterAdapter
  • gov.nih.nci.ncicb.tcga.dcc.dam.util.FilterRequestValidatorImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.util.FilterRequestValidator)
  • gov.nih.nci.cbiit.tcga.dcc.common.jaxb.generated.levelthreedata.FilterType
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file.FixedLengthRecord
    • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file.segment.SegmentRecord
      • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file.segment.BroadMitEduSegmentRecord
      • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file.segment.GenomeWustlEduSegmentRecord
      • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file.segment.HmsHarvardEduSegmentRecord
      • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file.segment.HudsonAlphaOrgSegmentRecord
      • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file.segment.MskccOrgSegmentRecord
  • java.util.concurrent.ForkJoinTask<V> (implements java.util.concurrent.Future<V>, java.io.Serializable)
    • java.util.concurrent.RecursiveTask<V>
      • gov.nih.nci.ncicb.tcga.dcc.io.api.util.concurrent.GzipDeflateFilesTask
  • nci.tcga.bcr.xml.clinical.shared._2.FrequencyOfAlcoholConsumption
  • java.util.concurrent.FutureTask<V> (implements java.util.concurrent.RunnableFuture<V>)
    • gov.nih.nci.ncicb.tcga.dcc.io.api.util.concurrent.RetryTask
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.GenCount
  • gov.nih.nci.ncicb.tcga.dcc.io.api.event.GenericEvent (implements gov.nih.nci.ncicb.tcga.dcc.io.api.event.Event, java.io.Serializable)
    • gov.nih.nci.ncicb.tcga.dcc.io.api.event.message.MessageEvent<T>
  • gov.nih.nci.ncicb.tcga.dcc.io.api.domain.message.GenericMessage<P> (implements gov.nih.nci.ncicb.tcga.dcc.io.api.domain.message.Message<P>, java.io.Serializable)
    • gov.nih.nci.ncicb.tcga.dcc.io.api.domain.message.ErrorMessage (implements gov.nih.nci.ncicb.tcga.dcc.io.api.domain.message.Message<P>)
  • javax.servlet.GenericServlet (implements java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig)
    • javax.servlet.http.HttpServlet
      • org.springframework.web.servlet.HttpServletBean (implements org.springframework.context.EnvironmentAware, org.springframework.core.env.EnvironmentCapable)
        • gov.nih.nci.ncicb.tcga.dcc.common.web.StaticContentServlet
  • gov.nih.nci.ncicb.tcga.dcc.common.util.GetterMethod
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.bcrpipeline.GraphConfig
  • gov.nih.nci.ncicb.tcga.dcc.test.integration.Greeter
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.Header (implements java.lang.Comparable<T>)
  • nci.tcga.bcr.xml.clinical.shared._2.HistologicalTypeOther
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.HomePageStats
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.HomePageStatsServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.service.HomePageStatsService)
  • nci.tcga.bcr.xml.clinical.shared._2.HormonalTherapy
  • gov.nih.nci.ncicb.tcga.dcc.io.client.config.HttpClientConfig
  • gov.nih.nci.ncicb.tcga.dcc.io.server.http.controller.HttpController
    • gov.nih.nci.ncicb.tcga.dcc.io.server.http.controller.DeltaEncodeHttpController
    • gov.nih.nci.ncicb.tcga.dcc.io.server.http.controller.TelemetryDataController
  • gov.nih.nci.ncicb.tcga.dcc.io.server.http.config.HttpServerConfig
  • gov.nih.nci.ncicb.tcga.dcc.io.server.http.config.HttpServerMetricsConfig
  • gov.nih.nci.ncicb.tcga.dcc.io.server.http.config.HttpServerPersistenceConfig
  • gov.nih.nci.ncicb.tcga.dcc.common.webservice.HttpStatusCode
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.IDF
  • nci.tcga.bcr.xml.clinical.shared._2.ImmunoTherapy
  • nci.tcga.bcr.xml.clinical.shared._2.InitPathologyDxMethodOther
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.validators.IntegerValidator (implements gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.BeanPropertyValidator)
  • gov.nih.nci.ncicb.tcga.dcc.io.api.config.IoApiConfig
  • gov.nih.nci.ncicb.tcga.dcc.io.api.config.IoApiEnvironmentConfig
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.IOCConstraintValidatorFactory (implements org.springframework.context.ApplicationContextAware, javax.validation.ConstraintValidatorFactory, org.springframework.beans.factory.InitializingBean)
  • gov.nih.nci.ncicb.tcga.dcc.common.util.Issue
  • gov.nih.nci.ncicb.tcga.dcc.common.util.IssueScanner
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.JAXBUtil
  • org.springframework.security.acls.jdbc.JdbcAclService (implements org.springframework.security.acls.model.AclService)
    • org.springframework.security.acls.jdbc.JdbcMutableAclService (implements org.springframework.security.acls.model.MutableAclService)
      • gov.nih.nci.ncicb.tcga.dcc.common.security.impl.SimpleJdbcMutableAclService
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.util.JdbcUtil
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.JndiDataSourceMaker (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.DataSourceMaker)
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.JobProcess
  • gov.nih.nci.ncicb.tcga.dcc.dam.webservice.JobProcessWS
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.JobRunner
  • org.quartz.impl.jdbcjobstore.JobStoreSupport (implements org.quartz.impl.jdbcjobstore.Constants, org.quartz.spi.JobStore)
    • org.quartz.impl.jdbcjobstore.JobStoreCMT
      • org.quartz.impl.jdbcjobstore.QueueJobStore
  • gov.nih.nci.ncicb.tcga.dcc.io.api.util.JsonConverterUtil
  • gov.nih.nci.ncicb.tcga.dcc.dam.util.JsonFileUtilsImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.util.JsonFileUtils)
  • gov.nih.nci.ncicb.tcga.dcc.common.web.json.JsonRequestToViewNameTranslator (implements org.springframework.web.servlet.RequestToViewNameTranslator)
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.KeyColumns
  • gov.nih.nci.ncicb.tcga.dcc.io.api.codec.kryo.KryoEncoder (implements gov.nih.nci.ncicb.tcga.dcc.io.api.codec.Encoder)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.fusioncharts.Label
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.LatestArchive
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.LatestArchiveController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.json.LatestArchiveJsonController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.constants.LatestGenericReportConstants
  • gov.nih.nci.ncicb.tcga.dcc.datareports.dao.jdbc.LatestGenericReportDAOImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.dao.LatestGenericReportDAO)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.service.LatestGenericReportServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.service.LatestGenericReportService)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.service.Level2DataCacheEnqueuer (implements gov.nih.nci.ncicb.tcga.dcc.ConstantValues, gov.nih.nci.ncicb.tcga.dcc.qclive.service.Level2DataCacheEnqueuerI)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.service.Level2DataCacheGenerationJob (implements gov.nih.nci.ncicb.tcga.dcc.ConstantValues, org.quartz.StatefulJob)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.Level2DataCacheGenerator (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.Level2DataCacheGeneratorI)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.Level2DataFilterBean (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.Level2DataQueriesJDBCImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.Level2DataQueries)
  • gov.nih.nci.ncicb.tcga.dcc.common.service.Level2DataService (implements gov.nih.nci.ncicb.tcga.dcc.common.service.JDBCCallback, gov.nih.nci.ncicb.tcga.dcc.common.service.Level2DataServiceI)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthreedata.LevelThreeDataLoader
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthreedata.LevelThreeDataLoaderMain
  • gov.nih.nci.ncicb.tcga.dcc.common.levelthreedata.bean.LevelThreeDataMapping
  • gov.nih.nci.ncicb.tcga.dcc.io.data.parser.LevelThreeDataParser (implements gov.nih.nci.ncicb.tcga.dcc.io.data.parser.DataParser<T>)
  • gov.nih.nci.cbiit.tcga.dcc.common.jaxb.generated.levelthreedata.LevelThreeDataType
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.LevelThreeLoader (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ArchiveLoader)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.LevelThreeLoaderCaller
  • gov.nih.nci.ncicb.tcga.dcc.io.api.lifecycle.LifecycleAware (implements org.springframework.context.SmartLifecycle)
    • gov.nih.nci.ncicb.tcga.dcc.io.server.api.AbstractServer (implements gov.nih.nci.ncicb.tcga.dcc.io.server.api.Server)
      • gov.nih.nci.ncicb.tcga.dcc.io.server.api.ApplicationContainer
        • gov.nih.nci.ncicb.tcga.dcc.io.server.api.embedded.TomcatServer
    • gov.nih.nci.ncicb.tcga.dcc.io.api.scheduler.CronScheduler
    • gov.nih.nci.ncicb.tcga.dcc.io.api.event.EventBus<E>
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.bcrpipeline.Listener
  • gov.nih.nci.ncicb.tcga.dcc.qclive.live.Live (implements gov.nih.nci.ncicb.tcga.dcc.qclive.live.LiveI)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.web.LiveMonitorController (implements org.springframework.web.servlet.mvc.Controller)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.LiveMonitorImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.LiveMonitor)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.LiveScheduler (implements gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.JobScheduler)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.Loader (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.LoaderArchive (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.bamloader.LoaderBAM
  • gov.nih.nci.ncicb.tcga.dcc.qclive.service.LoaderEnqueuer (implements gov.nih.nci.ncicb.tcga.dcc.qclive.service.LoaderStarter)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.service.LoaderRunner (implements gov.nih.nci.ncicb.tcga.dcc.qclive.service.LoaderRunnerI, java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.LoaderSDRF (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.Log
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.Log4JLoggerDestination (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.LoggerDestination)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.util.Logger
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.LoggerImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.Logger)
  • gov.nih.nci.ncicb.tcga.dcc.common.util.LoggingJobHistoryPlugin (implements org.quartz.JobListener, org.quartz.spi.SchedulerPlugin)
    • gov.nih.nci.ncicb.tcga.dcc.dam.service.PersistJobHistoryQuartzPlugin
  • gov.nih.nci.ncicb.tcga.dcc.common.web.LogQueryRequest
  • gov.nih.nci.ncicb.tcga.dcc.bamloader.LookupForBAMImpl (implements gov.nih.nci.ncicb.tcga.dcc.bamloader.LookupForBAM)
  • nci.tcga.bcr.xml.clinical.shared._2.LostFollowUp
  • nci.tcga.bcr.xml.clinical.shared._2.LymphaticInvasion
  • nci.tcga.bcr.xml.clinical.shared._2.LymphNodeExaminedCount
  • nci.tcga.bcr.xml.clinical.shared._2.LymphovascularInvasionPresent
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.MafFileValidator.ConditionalRequirement
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.MafInfo
  • gov.nih.nci.ncicb.tcga.dcc.datareports.webservice.MafWS
  • gov.nih.nci.ncicb.tcga.dcc.common.mail.MailErrorHelperImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.mail.MailErrorHelper)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.util.MailGenerator
  • gov.nih.nci.ncicb.tcga.dcc.common.mail.impl.MailSenderImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.mail.MailSender)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.ManifestParserImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.ManifestParser)
  • gov.nih.nci.ncicb.tcga.dcc.io.api.util.concurrent.ManualResetEvent
  • gov.nih.nci.ncicb.tcga.dcc.uuid.webservice.MappingWebService
  • gov.nih.nci.ncicb.tcga.dcc.common.util.md5.MD5ChecksumCreator
  • gov.nih.nci.ncicb.tcga.dcc.io.api.domain.message.MessageBuilder<P>
  • gov.nih.nci.ncicb.tcga.dcc.io.api.event.message.MessageEventBuilder<T>
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.util.MessageFormat
  • gov.nih.nci.ncicb.tcga.dcc.io.api.domain.message.MessageHeaders (implements java.util.Map<K,V>, java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.MetaDataBean (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.MetadataSearchWS
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.MetadataViewWS
  • nci.tcga.bcr.xml.clinical.shared._2.MetastaticSiteAtDiagnosisOther
  • gov.nih.nci.ncicb.tcga.dcc.io.api.domain.analytics.Metric (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.io.api.domain.analytics.MetricBuilder
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.MicrosatelliteInstabilityTestResult
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.MicrosatelliteInstabilityTestResults
  • nci.tcga.bcr.xml.clinical.shared._2.MonthOfBirth
  • nci.tcga.bcr.xml.administration._2.MonthOfDccUpload
  • nci.tcga.bcr.xml.clinical.shared._2.MonthOfDeath
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.MonthOfDrugTherapyEnd
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.MonthOfDrugTherapyStart
  • nci.tcga.bcr.xml.clinical.shared._2.MonthOfFormCompletion
  • nci.tcga.bcr.xml.clinical.shared._2.MonthOfInitialPathologicDiagnosis
  • nci.tcga.bcr.xml.clinical.shared._2.MonthOfLastFollowup
  • nci.tcga.bcr.xml.clinical.shared._2.MonthOfLastKnownAlive
  • nci.tcga.bcr.xml.clinical.shared._2.MonthOfPerformanceStatusFollowUpScore
  • nci.tcga.bcr.xml.clinical.radiation._2.MonthOfRadiationTherapyEnd
  • nci.tcga.bcr.xml.clinical.radiation._2.MonthOfRadiationTherapyStart
  • nci.tcga.bcr.xml.clinical.shared._2.MonthOfTumorProgression
  • nci.tcga.bcr.xml.clinical.shared._2.MonthOfTumorRecurrence
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.NcbiTrace
  • gov.nih.nci.ncicb.tcga.dcc.io.api.util.NetUtils
  • nci.tcga.bcr.xml.clinical.shared._2.NewTumorAdditionalRadTx
  • nci.tcga.bcr.xml.clinical.shared._2.NewTumorAdditionalRxTx
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.bcrpipeline.NodeData
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.NumberCycles
  • nci.tcga.bcr.xml.clinical.shared._2.NumberOfLymphnodesPositiveByHe
  • nci.tcga.bcr.xml.clinical.shared._2.NumberOfLymphnodesPositiveByIhc
  • nci.tcga.bcr.xml.clinical.shared._2.NumberPackYearsSmoked
  • gov.nih.nci.cbiit.tcga.dcc.common.jaxb.generated.levelthreedata.ObjectFactory
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.ObjectFactory
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.ObjectFactory
  • nci.tcga.bcr.xml.administration._2.ObjectFactory
  • nci.tcga.bcr.xml.utility._2.ObjectFactory
  • nci.tcga.bcr.xml.biospecimen.shared._2.ObjectFactory
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.ObjectFactory
  • nci.tcga.bcr.xml.clinical.shared._2.ObjectFactory
  • nci.tcga.bcr.xml.clinical.radiation._2.ObjectFactory
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.bcrpipeline.Output
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.ParentNode
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.ParticipantUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Patient
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.PatientBarcodeValidator
  • nci.tcga.bcr.xml.administration._2.PatientWithdrawal
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.PendingUUID
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.PendingUUIDController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.dao.jdbc.PendingUUIDDAOImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.dao.PendingUUIDDAO)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.json.PendingUUIDJsonController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.service.PendingUUIDProcessor (implements gov.nih.nci.ncicb.tcga.dcc.datareports.service.PendingUUIDService)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.constants.PendingUUIDReportConstants
  • gov.nih.nci.ncicb.tcga.dcc.datareports.service.PendingUUIDReportServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.service.PendingUUIDReportService)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.webservice.PendingUUIDResponse
  • gov.nih.nci.ncicb.tcga.dcc.datareports.webservice.PendingUUIDWS
  • java.beans.PersistenceDelegate
    • gov.nih.nci.ncicb.tcga.dcc.dam.web.editor.UUIDPersistenceDelegate
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.Platform (implements java.io.Serializable)
    • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.PlatformCode
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.request.PollingRequest
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.PopulateTraceInfo
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Portion
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.PortionAnalyte (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.PortionNumber
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Portions
  • gov.nih.nci.ncicb.tcga.dcc.dam.util.clinical.PortionSlide
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.PortionUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.bcrpipeline.Position
  • nci.tcga.bcr.xml.clinical.shared._2.PostoperativeRxTx
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.PrescribedDose
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.PrescribedDoseUnits
  • nci.tcga.bcr.xml.clinical.shared._2.PrimaryLymphNodePresentationAssessment
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.ProbeLookup
  • gov.nih.nci.ncicb.tcga.dcc.common.util.ProcessLogger (implements gov.nih.nci.ncicb.tcga.dcc.common.util.ProcessLoggerI, java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.ProcessorAdvice (implements org.springframework.aop.AfterReturningAdvice, org.springframework.aop.MethodBeforeAdvice, org.springframework.aop.ThrowsAdvice)
  • nci.tcga.bcr.xml.clinical.shared._2.ProgressionStatus
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.Project (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.ProjectCase
  • gov.nih.nci.ncicb.tcga.dcc.datareports.constants.ProjectCaseDashboardConstants
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.ProjectCaseDashboardController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.dao.jdbc.ProjectCaseDashboardDAOImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.dao.ProjectCaseDashboardDAO, java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.json.ProjectCaseDashboardJsonController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.service.ProjectCaseDashboardServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.service.ProjectCaseDashboardService)
  • org.springframework.core.io.support.PropertiesLoaderSupport
    • org.springframework.beans.factory.config.PropertyResourceConfigurer (implements org.springframework.beans.factory.config.BeanFactoryPostProcessor, org.springframework.core.PriorityOrdered)
      • org.springframework.beans.factory.config.PlaceholderConfigurerSupport (implements org.springframework.beans.factory.BeanFactoryAware, org.springframework.beans.factory.BeanNameAware)
        • org.springframework.beans.factory.config.PropertyPlaceholderConfigurer
          • gov.nih.nci.ncicb.tcga.dcc.common.annotations.TCGAValueImpl
  • java.beans.PropertyEditorSupport (implements java.beans.PropertyEditor)
    • gov.nih.nci.ncicb.tcga.dcc.dam.web.editor.UUIDEditor
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.ProtectedClinicalElement
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.jdbc.ProtectedClinicalElementDAOImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.ProtectedClinicalElementDAO)
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.ProtectedElements
  • gov.nih.nci.ncicb.tcga.dcc.common.util.ProtocolNameParser
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.ProtocolNameValidator
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.QcContext
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.QcliveCloseableUtil
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.QcLiveJobInfo
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.QcLiveStateBean (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.QCLiveTestDataGenerator
  • gov.nih.nci.ncicb.tcga.dcc.qclive.util.QCliveXMLSchemaValidator
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.QcStatsLoggerImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.QcStatsLogger)
  • org.springframework.scheduling.quartz.QuartzJobBean (implements org.quartz.Job)
    • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.ArchiveCleanupJob
    • gov.nih.nci.ncicb.tcga.dcc.dam.service.DAMQMSReportCreateJob
    • gov.nih.nci.ncicb.tcga.dcc.dam.service.DAMQMSReportDeleteJob
    • gov.nih.nci.ncicb.tcga.dcc.dam.service.DAMRefreshJob
    • gov.nih.nci.ncicb.tcga.dcc.dam.service.JobDelegate
    • gov.nih.nci.ncicb.tcga.dcc.qclive.service.LoaderJob (implements java.io.Serializable)
    • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.UpdateTraceInfoJob
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.QuartzJobHistory (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.QuartzJobHistoryDeletionJob (implements gov.nih.nci.ncicb.tcga.dcc.dam.service.QueueJob<J>)
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.QuartzJobHistoryServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.service.QuartzJobHistoryService)
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.QuartzQueueJobDetails
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.QuartzQueueJobDetailsServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.service.QuartzQueueJobDetailsService)
  • gov.nih.nci.ncicb.tcga.dcc.dam.web.QueueMonitorController (implements org.springframework.web.servlet.mvc.Controller)
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.QueueMonitorItem
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Radiation
  • nci.tcga.bcr.xml.clinical.radiation._2.Radiation
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Radiations
  • nci.tcga.bcr.xml.clinical.radiation._2.Radiations
  • nci.tcga.bcr.xml.clinical.shared._2.RadiationTherapy
  • nci.tcga.bcr.xml.clinical.radiation._2.RadiationTreatmentOngoing
  • nci.tcga.bcr.xml.clinical.radiation._2.RadiationTypeNotes
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.RadiationUUIDWS
  • nci.tcga.bcr.xml.administration._2.Redaction
  • gov.nih.nci.ncicb.tcga.dcc.common.service.RedactionServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.service.RedactionService)
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.RegimenNumber
  • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.RemoteCenterQueries (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.CenterQueries)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.remote.RemoteCodeTableQueries (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.CodeTableQueries)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.soundcheck.RemoteValidationHelperCaCoreImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.soundcheck.RemoteValidationHelper)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.util.RestfulWebserviceClientImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.util.RestfulWebserviceClient)
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.RouteOfAdministrations
  • gov.nih.nci.ncicb.tcga.dcc.qclive.util.RowCounter (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Sample
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.Sample
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Samples
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.SampleSummary
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.SampleSummaryController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.json.SampleSummaryJsonController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.constants.SampleSummaryReportConstants
  • gov.nih.nci.ncicb.tcga.dcc.datareports.dao.jdbc.SampleSummaryReportDAOImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.dao.SampleSummaryReportDAO, java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.service.SampleSummaryReportServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.service.SampleSummaryReportService)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.webservice.SampleSummaryWS
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.SampleType (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.validators.SampleTypeValidator (implements gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.BeanPropertyValidator)
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.SampleUUIDWS
  • org.springframework.scheduling.quartz.SchedulerAccessor (implements org.springframework.context.ResourceLoaderAware)
    • org.springframework.scheduling.quartz.SchedulerFactoryBean (implements org.springframework.context.ApplicationContextAware, org.springframework.beans.factory.BeanNameAware, org.springframework.beans.factory.DisposableBean, org.springframework.beans.factory.FactoryBean<T>, org.springframework.beans.factory.InitializingBean, org.springframework.context.SmartLifecycle)
      • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.SchedulerFactoryBeanWithDataSource
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.SDRF
  • gov.nih.nci.ncicb.tcga.dcc.datareports.webservice.SdrfWS
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.SearchCriteria
  • gov.nih.nci.ncicb.tcga.dcc.common.security.impl.SecurityControllerImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.security.SecurityController)
  • gov.nih.nci.ncicb.tcga.dcc.common.security.impl.SecurityFilter (implements javax.servlet.Filter)
  • gov.nih.nci.ncicb.tcga.dcc.common.security.impl.SecurityUtilImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.security.SecurityUtil)
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.request.SelectionRequest
  • gov.nih.nci.ncicb.tcga.dcc.datareports.email.SendEmail
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.ServerDataStore
  • javax.servlet.ServletRequestWrapper (implements javax.servlet.ServletRequest)
    • javax.servlet.http.HttpServletRequestWrapper (implements javax.servlet.http.HttpServletRequest)
      • org.owasp.esapi.filters.SecurityWrapperRequest (implements javax.servlet.http.HttpServletRequest)
        • gov.nih.nci.ncicb.tcga.dcc.common.security.impl.SecurityFilterRequestWrapper
  • javax.servlet.ServletResponseWrapper (implements javax.servlet.ServletResponse)
    • javax.servlet.http.HttpServletResponseWrapper (implements javax.servlet.http.HttpServletResponse)
      • org.owasp.esapi.filters.SecurityWrapperResponse (implements javax.servlet.http.HttpServletResponse)
        • gov.nih.nci.ncicb.tcga.dcc.common.security.impl.SecurityFilterResponseWrapper
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.ShipmentPortion
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.ShipmentPortionBcrAliquotBarcode
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.ShippedBiospecimen
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.ShippedBiospecimenElement
  • gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.client.impl.ShippedBiospecimenWSQueriesImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.ShippedBiospecimenQueries)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.ShippedPortionIdProcessorImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.ShippedPortionIdProcessor)
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.ShippedPortionUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.io.api.graph.SimpleEdge<V> (implements gov.nih.nci.ncicb.tcga.dcc.io.api.graph.Edge<V>)
    • gov.nih.nci.ncicb.tcga.dcc.io.api.graph.SimpleWeightedEdge<V> (implements gov.nih.nci.ncicb.tcga.dcc.io.api.graph.Edge<V>, gov.nih.nci.ncicb.tcga.dcc.io.api.graph.WeightedEdge<V>)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.bcrpipeline.Size
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Slide
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.validators.SlideLayerValidator (implements gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.BeanPropertyValidator)
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Slides
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.SlideUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.qclive.soundcheck.Soundcheck
  • gov.nih.nci.ncicb.tcga.dcc.common.util.SourceFileTypeFinderSdrfParserImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.util.SourceFileTypeFinder)
  • gov.nih.nci.ncicb.tcga.dcc.common.framework.SpringApplicationContext (implements org.springframework.context.ApplicationContextAware)
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.SpringDataSourceMaker (implements org.springframework.context.ApplicationContextAware, gov.nih.nci.ncicb.tcga.dcc.common.dao.DataSourceMaker)
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.SQLProcessingCleaner
  • gov.nih.nci.ncicb.tcga.dcc.qclive.standalone.StandaloneValidator
  • gov.nih.nci.ncicb.tcga.dcc.dam.util.StaticLogger
  • gov.nih.nci.ncicb.tcga.dcc.dam.view.StaticMatrixModelFactory (implements gov.nih.nci.ncicb.tcga.dcc.dam.view.StaticMatrixModelFactoryI)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.constants.StatsDashboardConstants
  • gov.nih.nci.ncicb.tcga.dcc.datareports.dao.jdbc.StatsDashboardDAOImpl (implements java.io.Serializable, gov.nih.nci.ncicb.tcga.dcc.datareports.dao.StatsDashboardDAO)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.json.StatsDashboardJsonController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.service.StatsDashboardServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.service.StatsDashboardService)
  • nci.tcga.bcr.xml.clinical.shared._2.StoppedSmokingYear
  • gov.nih.nci.ncicb.tcga.dcc.qclive.util.StringTokenizerThatCanReturnNull
  • gov.nih.nci.ncicb.tcga.dcc.common.util.StringUtil
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.Submission
  • gov.nih.nci.ncicb.tcga.dcc.datareports.constants.SubmissionReportConstants
  • gov.nih.nci.ncicb.tcga.dcc.datareports.web.SubmissionReportController
  • gov.nih.nci.ncicb.tcga.dcc.datareports.service.SubmissionReportServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.datareports.service.SubmissionReportService)
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Surgeries
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.Surgery
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.SurgeryUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.common.util.TabDelimitedContentImpl (implements java.io.Serializable, gov.nih.nci.ncicb.tcga.dcc.common.util.TabDelimitedContent)
  • gov.nih.nci.ncicb.tcga.dcc.dam.util.TabDelimitedContentImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.util.TabDelimitedContent)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.TabDelimitedContentNavigator
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.TabDelimitedContentWriter
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.TabDelimitedFileParser
  • gov.nih.nci.cbiit.tcga.dcc.common.jaxb.generated.levelthreedata.TableColumnHeaderNameType
  • gov.nih.nci.ncicb.tcga.dcc.common.levelthreedata.bean.TableColumnName
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.TargetCase
  • nci.tcga.bcr.xml.clinical.shared._2.TargetedMolecularTherapy
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.TcgaBcr
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.TcgaBcrData
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.TcgaBcrDataTemplate
  • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.TCGAFileFilter (implements java.io.FilenameFilter)
  • gov.nih.nci.ncicb.tcga.dcc.io.client.analytics.TelemetryClient (implements gov.nih.nci.ncicb.tcga.dcc.io.client.Client<T>)
  • gov.nih.nci.ncicb.tcga.dcc.io.api.domain.analytics.TelemetryData (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.dam.util.TempClinicalDataLoader
  • gov.nih.nci.ncicb.tcga.dcc.io.data.TextDataFileReader (implements gov.nih.nci.ncicb.tcga.dcc.io.data.DataFileReader<T>)
  • gov.nih.nci.ncicb.tcga.dcc.common.util.TextFileComparer
  • gov.nih.nci.ncicb.tcga.dcc.common.util.TextFileComparer.TextComparisonEvent
  • gov.nih.nci.ncicb.tcga.dcc.common.util.TextFileComparer.TextComparisonResult
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.TherapyOngoing
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.TherapyTypes
  • java.lang.Thread (implements java.lang.Runnable)
    • com.deltax.util.listener.BaseSignalSourceThread
      • org.sadun.util.polling.DirectoryPoller (implements org.sadun.util.Terminable)
        • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.TCGADirectoryPoller
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • gov.nih.nci.ncicb.tcga.dcc.common.dao.annotations.AnnotationQueries.AnnotationQueriesException
      • gov.nih.nci.ncicb.tcga.dcc.qclive.standalone.ArchiveCopyStandaloneException
      • gov.nih.nci.ncicb.tcga.dcc.dam.dao.ArchiveListerQueries.ArchiveListerException
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.ArchiveUtil.ArchiveUtilException
      • gov.nih.nci.ncicb.tcga.dcc.common.exception.BeanException
      • gov.nih.nci.ncicb.tcga.dcc.qclive.util.ChromInfoUtils.UnknownChromException
      • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.clinical.ClinicalLoaderException
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.xml.ClinicalXmlValidator.UnexpectedInput
      • gov.nih.nci.ncicb.tcga.dcc.common.util.CommonBarcodeAndUUIDValidator.CommonBarcodeAndUUIDValidatorException
      • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataAccessMatrixQueries.DAMQueriesException
      • gov.nih.nci.ncicb.tcga.dcc.common.exception.DataException
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.DataMatrixParser.DataMatrixParseError
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.DateUtilsException
      • gov.nih.nci.ncicb.tcga.dcc.common.generation.FileGeneratorException
      • gov.nih.nci.ncicb.tcga.dcc.dam.service.HomePageStatsServiceImpl.HomePageStatsServiceException
      • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.LoaderException
      • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthreedata.LoaderException
      • gov.nih.nci.ncicb.tcga.dcc.qclive.dao.LoaderQueriesException
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.LoggerDestination.LoggerException
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ProcessorException
      • java.lang.RuntimeException
        • gov.nih.nci.ncicb.tcga.dcc.io.api.graph.GraphException
        • gov.nih.nci.ncicb.tcga.dcc.common.InvalidMetadataException
      • gov.nih.nci.ncicb.tcga.dcc.common.exception.SchemaException
      • gov.nih.nci.ncicb.tcga.dcc.dam.dao.TumorMainCountQueries.TumorMainCountQueriesException
      • gov.nih.nci.ncicb.tcga.dcc.dam.service.TumorMainService.TumorMainServiceException
      • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.UnsupportedFileException
      • gov.nih.nci.ncicb.tcga.dcc.dam.dao.usage.UsageLoggerException
      • gov.nih.nci.ncicb.tcga.dcc.common.exception.UUIDException
      • gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.client.impl.WebServiceException
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.Tissue
  • nci.tcga.bcr.xml.clinical.shared._2.TissueProspectiveCollectionIndicator
  • nci.tcga.bcr.xml.clinical.shared._2.TissueRetrospectiveCollectionIndicator
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.TissueSourceSite (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.bcrpipeline.Total
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.TotalDose
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.TotalDoseUnits
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.TraceFileInfo
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.TraceRelationship
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.TSSUUIDWS
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.Tumor (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.TumorDetailsServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.service.TumorDetailsService)
  • gov.nih.nci.ncicb.tcga.dcc.dam.webservice.TumorDetailsWS
  • gov.nih.nci.ncicb.tcga.dcc.dam.bean.stats.TumorMainCount (implements java.lang.Comparable<T>)
  • gov.nih.nci.ncicb.tcga.dcc.dam.webservice.TumorMainCountJAXBContextResolver (implements javax.ws.rs.ext.ContextResolver<T>)
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.TumorMainServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.dam.service.TumorMainService)
  • gov.nih.nci.ncicb.tcga.dcc.dam.webservice.TumorMainWS
  • gov.nih.nci.ncicb.tcga.dcc.dam.util.TumorNormalClassifier (implements gov.nih.nci.ncicb.tcga.dcc.dam.util.TumorNormalClassifierI)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.TumorSampleUuidInfo
  • nci.tcga.bcr.xml.clinical.shared._2.TumorTissueSiteOther
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.bcrpipeline.TumorTypes
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.TxOnClinicalTrial
  • gov.nih.nci.ncicb.tcga.dcc.io.api.util.TypeResolver
  • gov.nih.nci.ncicb.tcga.dcc.common.util.UniversalNamespaceCache (implements javax.xml.namespace.NamespaceContext)
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.UnmarshalResult
  • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.UpdateTraceInfoRunner
  • gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.UploadCheckerJob (implements org.quartz.StatefulJob)
  • gov.nih.nci.ncicb.tcga.dcc.dam.aop.UsageAdvice (implements org.springframework.aop.AfterReturningAdvice, org.springframework.aop.MethodBeforeAdvice)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.UuidBarcodeMapping
  • gov.nih.nci.ncicb.tcga.dcc.uuid.constants.UUIDBrowserConstants
  • gov.nih.nci.ncicb.tcga.dcc.uuid.web.controllers.UUIDBrowserController
  • gov.nih.nci.ncicb.tcga.dcc.uuid.dao.jdbc.UUIDBrowserDAOImpl (implements gov.nih.nci.ncicb.tcga.dcc.uuid.dao.UUIDBrowserDAO)
  • gov.nih.nci.ncicb.tcga.dcc.uuid.web.json.UUIDBrowserJsonController
  • gov.nih.nci.ncicb.tcga.dcc.uuid.service.UUIDBrowserServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.uuid.service.UUIDBrowserService)
  • gov.nih.nci.ncicb.tcga.dcc.uuid.webservice.UUIDBrowserWebService
  • gov.nih.nci.ncicb.tcga.dcc.uuid.bean.uuidbrowserws.UUIDBrowserWS
  • gov.nih.nci.ncicb.tcga.dcc.uuid.webservice.bean.UUIDBrowserWSQueryParamBean
  • gov.nih.nci.ncicb.tcga.dcc.uuid.service.UUIDCommonServiceImpl<X> (implements gov.nih.nci.ncicb.tcga.dcc.uuid.service.UUIDCommonService<X>)
  • gov.nih.nci.ncicb.tcga.dcc.common.util.UUIDConstants
  • gov.nih.nci.ncicb.tcga.dcc.common.dao.UUIDDAOImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.dao.UUIDDAO)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.UUIDDetail
  • gov.nih.nci.ncicb.tcga.dcc.common.util.UUIDGenerator
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.UUIDItemType (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.common.service.UUIDServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.common.service.UUIDService)
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.UUIDType
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.validators.UUIDValidator (implements gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.BeanPropertyValidator)
  • gov.nih.nci.ncicb.tcga.dcc.uuid.webservice.UUIDWebServiceUtilImpl (implements gov.nih.nci.ncicb.tcga.dcc.uuid.webservice.UUIDWebServiceUtil)
  • gov.nih.nci.ncicb.tcga.dcc.common.webservice.bean.ValidationErrors<T>
  • gov.nih.nci.ncicb.tcga.dcc.common.webservice.bean.ValidationErrors.ValidationError
  • gov.nih.nci.ncicb.tcga.dcc.common.webservice.bean.ValidationResult
  • gov.nih.nci.ncicb.tcga.dcc.common.webservice.bean.ValidationResults
  • gov.nih.nci.ncicb.tcga.dcc.uuid.webservice.ValidationWebService
  • gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.client.impl.ValidationWebServiceQueriesImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.client.ValidationWebServiceQueries)
  • gov.nih.nci.ncicb.tcga.dcc.datareports.bean.fusioncharts.Value
  • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.ValuesLoader
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.VcfFile
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.VcfFileDataLineValidatorImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.VcfFileDataLineValidator)
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.TcgaVcfFileDataLineValidatorImpl
  • gov.nih.nci.ncicb.tcga.dcc.qclive.bean.VcfFileHeader
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.VcfFileHeaderValidator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.TcgaVcfFileHeaderValidator
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.VcfFileValidatorUtil
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.VcfHeaderDefinitionStoreDBImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.VcfHeaderDefinitionStore)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.VcfHeaderDefinitionStorePropertyFileImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.VcfHeaderDefinitionStore)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.VcfParserImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.common.VcfParser)
  • nci.tcga.bcr.xml.clinical.shared._2.VenousInvasion
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.ViewAndExtensionForExport
  • gov.nih.nci.ncicb.tcga.dcc.common.bean.Visibility (implements java.io.Serializable)
  • gov.nih.nci.ncicb.tcga.dcc.qclive.service.VisibilityServiceImpl (implements gov.nih.nci.ncicb.tcga.dcc.qclive.service.VisibilityService)
  • org.springframework.web.servlet.config.annotation.WebMvcConfigurerAdapter (implements org.springframework.web.servlet.config.annotation.WebMvcConfigurer)
    • gov.nih.nci.ncicb.tcga.dcc.io.server.api.config.WebConfig
  • gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.util.WebserviceInput
  • gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.util.WebserviceOutput
  • gov.nih.nci.ncicb.tcga.dcc.common.webservice.WebServiceUtil
  • java.io.Writer (implements java.lang.Appendable, java.io.Closeable, java.io.Flushable)
    • gov.nih.nci.ncicb.tcga.dcc.dam.util.ThreadedBufferedWriter
  • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.XmlData
  • gov.nih.nci.ncicb.tcga.dcc.common.util.XMLFileFilter (implements java.io.FilenameFilter)
  • org.xml.sax.helpers.XMLFilterImpl (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler, org.xml.sax.XMLFilter)
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.MetaDataXMLNamespaceFilter
  • gov.nih.nci.ncicb.tcga.dcc.common.util.XPathXmlParser (implements gov.nih.nci.ncicb.tcga.dcc.common.util.XmlParser)
  • nci.tcga.bcr.xml.clinical.shared._2.YearOfBirth
  • nci.tcga.bcr.xml.administration._2.YearOfDccUpload
  • nci.tcga.bcr.xml.clinical.shared._2.YearOfDeath
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.YearOfDrugTherapyEnd
  • nci.tcga.bcr.xml.clinical.pharmaceutical._2.YearOfDrugTherapyStart
  • nci.tcga.bcr.xml.clinical.shared._2.YearOfFormCompletion
  • nci.tcga.bcr.xml.clinical.shared._2.YearOfInitialPathologicDiagnosis
  • nci.tcga.bcr.xml.clinical.shared._2.YearOfLastFollowup
  • nci.tcga.bcr.xml.clinical.shared._2.YearOfLastKnownAlive
  • nci.tcga.bcr.xml.clinical.shared._2.YearOfPerformanceStatusFollowUpScore
  • nci.tcga.bcr.xml.clinical.radiation._2.YearOfRadiationTherapyEnd
  • nci.tcga.bcr.xml.clinical.radiation._2.YearOfRadiationTherapyStart
  • nci.tcga.bcr.xml.clinical.shared._2.YearOfTobaccoSmokingOnset
  • nci.tcga.bcr.xml.clinical.shared._2.YearOfTumorProgression
  • nci.tcga.bcr.xml.clinical.shared._2.YearOfTumorRecurrence

Interface Hierarchy

• gov.nih.nci.ncicb.tcga.dcc.annotations.security.AclSecurityController
• gov.nih.nci.ncicb.tcga.dcc.common.security.AclSecurityUtil
• gov.nih.nci.ncicb.tcga.dcc.dam.service.AdminService
• gov.nih.nci.ncicb.tcga.dcc.datareports.dao.AliquotIdBreakdownReportDAO
• gov.nih.nci.ncicb.tcga.dcc.datareports.service.AliquotIdBreakdownReportService
• gov.nih.nci.ncicb.tcga.dcc.datareports.dao.AliquotReportDAO
• gov.nih.nci.ncicb.tcga.dcc.datareports.service.AliquotReportService
• gov.nih.nci.ncicb.tcga.dcc.annotations.web.AnnotationController
• gov.nih.nci.ncicb.tcga.dcc.annotations.web.AnnotationExportController
• gov.nih.nci.ncicb.tcga.dcc.common.dao.annotations.AnnotationQueries
• gov.nih.nci.ncicb.tcga.dcc.annotations.service.AnnotationRssService
• gov.nih.nci.ncicb.tcga.dcc.common.service.annotations.AnnotationService
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.ArchiveCompressor
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.ArchiveListerQueries
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.ArchiveListerQueries.LinkMaker
• gov.nih.nci.ncicb.tcga.dcc.dam.service.ArchiveListerService
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ArchiveLoader
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.ArchiveLogger
• gov.nih.nci.ncicb.tcga.dcc.common.dao.ArchiveQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.ArchiveTypeQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.ArchiveUtil
• java.lang.AutoCloseable
  • java.io.Closeable
    • gov.nih.nci.ncicb.tcga.dcc.io.api.handler.message.MessageHandlerContext
  • gov.nih.nci.ncicb.tcga.dcc.io.api.handler.message.MessageHandlerContext
• gov.nih.nci.ncicb.tcga.dcc.common.dao.BAMFileQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.BarcodeTumorValidator
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.BarcodeUuidResolver
• gov.nih.nci.ncicb.tcga.dcc.common.dao.BatchNumberQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.BCRDataService
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.BCRIDProcessor
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.BCRIDQueries
• gov.nih.nci.ncicb.tcga.dcc.datareports.service.BCRPipelineReportService
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.BCRUtils
• gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.BeanPropertyValidator
• gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.client.BiospecimenIdWsQueries
• gov.nih.nci.ncicb.tcga.dcc.common.service.CacheFileGenerator
• gov.nih.nci.ncicb.tcga.dcc.common.dao.CenterQueries
• gov.nih.nci.ncicb.tcga.dcc.datareports.email.CenterSampleReportGenerator
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.ChromInfoQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.util.ChromInfoUtils
• gov.nih.nci.ncicb.tcga.dcc.io.client.Client<T>
• gov.nih.nci.ncicb.tcga.dcc.common.dao.ClientDataStoreQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.ClinicalLoaderQueries
• gov.nih.nci.ncicb.tcga.dcc.common.dao.ClinicalMetaQueries
• gov.nih.nci.ncicb.tcga.dcc.common.dao.CodeTableQueries
• gov.nih.nci.ncicb.tcga.dcc.datareports.dao.CodeTablesReportDAO
• gov.nih.nci.ncicb.tcga.dcc.datareports.service.CodeTablesReportService
• gov.nih.nci.ncicb.tcga.dcc.common.util.CommonBarcodeAndUUIDValidator
  • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.QcLiveBarcodeAndUUIDValidator
• gov.nih.nci.ncicb.tcga.dcc.common.service.CommonQmsService
  • gov.nih.nci.ncicb.tcga.dcc.dam.service.DAMQMSService
• gov.nih.nci.ncicb.tcga.dcc.ConstantValues
  • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataAccessMatrixQueries
• gov.nih.nci.ncicb.tcga.dcc.common.dao.ControlQueries
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMDiseaseQueries
• gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMFacadeI
• gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMHelperI
• gov.nih.nci.ncicb.tcga.dcc.dam.service.DAMJobStatusService
• gov.nih.nci.ncicb.tcga.dcc.dam.view.DAMModel
• gov.nih.nci.ncicb.tcga.dcc.common.dao.DAMQMSQueries
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMQueriesStatsI
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMSubmittedSampleI
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMUtilsI
• gov.nih.nci.ncicb.tcga.dcc.io.data.DataFileReader<T>
• gov.nih.nci.ncicb.tcga.dcc.io.data.parser.DataParser<T>
• gov.nih.nci.ncicb.tcga.dcc.datareports.service.DatareportsService<X>
• gov.nih.nci.ncicb.tcga.dcc.dam.util.DataSetReducerI
• gov.nih.nci.ncicb.tcga.dcc.dam.util.DataSorterAndGapFillerI
• gov.nih.nci.ncicb.tcga.dcc.common.dao.DataSourceMaker
• gov.nih.nci.ncicb.tcga.dcc.data.datastore.DataStoreService
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.DataTypeCountQueries
• gov.nih.nci.ncicb.tcga.dcc.common.dao.DataTypeQueries
• gov.nih.nci.ncicb.tcga.dcc.common.dao.DccPropertyQueries
• gov.nih.nci.ncicb.tcga.dcc.io.api.codec.Decoder
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.DirectoryLister
• gov.nih.nci.ncicb.tcga.dcc.io.api.graph.Edge<V>
  • gov.nih.nci.ncicb.tcga.dcc.io.api.graph.WeightedEdge<V>
• gov.nih.nci.ncicb.tcga.dcc.io.api.codec.Encoder
• gov.nih.nci.ncicb.tcga.dcc.io.api.event.Event
• gov.nih.nci.ncicb.tcga.dcc.io.api.event.EventContext
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.ExperimentDAO
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.ExperimentQueries
• gov.nih.nci.ncicb.tcga.dcc.common.dao.FileArchiveQueries
• gov.nih.nci.ncicb.tcga.dcc.common.dao.FileCollectionQueries
• gov.nih.nci.ncicb.tcga.dcc.data.datastore.FileDataStore
• gov.nih.nci.ncicb.tcga.dcc.common.generation.FileGenerator
• gov.nih.nci.ncicb.tcga.dcc.common.dao.FileInfoQueries
• gov.nih.nci.ncicb.tcga.dcc.dam.service.FilePackagerEnqueuerI
• gov.nih.nci.ncicb.tcga.dcc.dam.processors.FilePackagerFactoryI
• gov.nih.nci.ncicb.tcga.dcc.dam.processors.FilePackagerI
• gov.nih.nci.ncicb.tcga.dcc.dam.view.request.FilterRequestI
• gov.nih.nci.ncicb.tcga.dcc.dam.util.FilterRequestValidator
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.group.validation.GenomeWustlEdu
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.group.validation.HmsHarvardEdu
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.HomePageStatsQueries
• gov.nih.nci.ncicb.tcga.dcc.dam.service.HomePageStatsService
• gov.nih.nci.ncicb.tcga.dcc.io.client.http.HttpClient
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.group.validation.HudsonAlphaOrg
• gov.nih.nci.ncicb.tcga.dcc.io.api.handler.message.InboundMessageHandler<I>
• java.lang.Iterable<T>
  • gov.nih.nci.ncicb.tcga.dcc.io.api.graph.Graph<V,E>
• gov.nih.nci.ncicb.tcga.dcc.common.service.JDBCCallback
• gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.JobScheduler
• gov.nih.nci.ncicb.tcga.dcc.dam.util.JsonFileUtils
• gov.nih.nci.ncicb.tcga.dcc.datareports.dao.LatestGenericReportDAO
• gov.nih.nci.ncicb.tcga.dcc.datareports.service.LatestGenericReportService
• gov.nih.nci.ncicb.tcga.dcc.qclive.service.Level2DataCacheEnqueuerI
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.Level2DataCacheGeneratorI
• gov.nih.nci.ncicb.tcga.dcc.common.dao.Level2DataQueries
• gov.nih.nci.ncicb.tcga.dcc.common.service.Level2DataServiceI
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.jdbc.LevelThreeQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.live.LiveI
• gov.nih.nci.ncicb.tcga.dcc.qclive.live.service.LiveMonitor
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader.LoaderQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.service.LoaderRunnerI
• gov.nih.nci.ncicb.tcga.dcc.qclive.service.LoaderStarter
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.Logger
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.LoggerDestination
• gov.nih.nci.ncicb.tcga.dcc.common.dao.LogQueries
• gov.nih.nci.ncicb.tcga.dcc.bamloader.LookupForBAM
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.MafInfoQueries
• gov.nih.nci.ncicb.tcga.dcc.common.mail.MailErrorHelper
• gov.nih.nci.ncicb.tcga.dcc.common.mail.MailSender
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.ManifestParser
• gov.nih.nci.ncicb.tcga.dcc.io.api.domain.message.Message<P>
• gov.nih.nci.ncicb.tcga.dcc.io.api.domain.message.MessageHeaders.IdGenerator
• gov.nih.nci.ncicb.tcga.dcc.qclive.Messages
• gov.nih.nci.ncicb.tcga.dcc.dam.Messages
• gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.group.validation.MskccOrg
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.MVRefreshQueries
• gov.nih.nci.ncicb.tcga.dcc.common.util.NameLister
• gov.nih.nci.ncicb.tcga.dcc.io.api.handler.message.OutboundMessageHandler<O>
• gov.nih.nci.ncicb.tcga.dcc.datareports.dao.PendingUUIDDAO
• gov.nih.nci.ncicb.tcga.dcc.datareports.service.PendingUUIDReportService
• gov.nih.nci.ncicb.tcga.dcc.datareports.service.PendingUUIDService
• gov.nih.nci.ncicb.tcga.dcc.common.dao.PlatformQueries
• gov.nih.nci.ncicb.tcga.dcc.common.dao.PortionAnalyteQueries
• gov.nih.nci.ncicb.tcga.dcc.common.util.ProcessLoggerI
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.Processor<T,S>
• gov.nih.nci.ncicb.tcga.dcc.datareports.dao.ProjectCaseDashboardDAO
• gov.nih.nci.ncicb.tcga.dcc.datareports.service.ProjectCaseDashboardService
• gov.nih.nci.ncicb.tcga.dcc.common.dao.ProjectDAO
• gov.nih.nci.ncicb.tcga.dcc.common.dao.ProtectedClinicalElementDAO
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.QcLiveShippedBiospecimenQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.logging.QcStatsLogger
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.QuartzJobHistoryQueries
• gov.nih.nci.ncicb.tcga.dcc.dam.service.QuartzJobHistoryService
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.QuartzQueueJobDetailsQueries
• gov.nih.nci.ncicb.tcga.dcc.dam.service.QuartzQueueJobDetailsService
• gov.nih.nci.ncicb.tcga.dcc.dam.service.QueueJob<J>
• gov.nih.nci.ncicb.tcga.dcc.common.dao.RedactionQueries
• gov.nih.nci.ncicb.tcga.dcc.common.service.RedactionService
• gov.nih.nci.ncicb.tcga.dcc.qclive.soundcheck.RemoteValidationHelper
• gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.util.RestfulWebserviceClient
• gov.nih.nci.ncicb.tcga.dcc.datareports.dao.SampleSummaryReportDAO
• gov.nih.nci.ncicb.tcga.dcc.datareports.service.SampleSummaryReportService
• gov.nih.nci.ncicb.tcga.dcc.common.dao.SampleTypeQueries
• gov.nih.nci.ncicb.tcga.dcc.common.security.SecurityController
• gov.nih.nci.ncicb.tcga.dcc.common.security.SecurityUtil
• java.io.Serializable
  • gov.nih.nci.ncicb.tcga.dcc.common.service.FileTypeLookup
  • gov.nih.nci.ncicb.tcga.dcc.common.service.StatusCallback
• gov.nih.nci.ncicb.tcga.dcc.io.server.api.Server
• gov.nih.nci.ncicb.tcga.dcc.common.dao.ServerDataStoreQueries
• gov.nih.nci.ncicb.tcga.dcc.common.dao.ShippedBiospecimenQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.ShippedPortionIdProcessor
• gov.nih.nci.ncicb.tcga.dcc.common.util.SourceFileTypeFinder
• gov.nih.nci.ncicb.tcga.dcc.dam.view.StaticMatrixModelFactoryI
• gov.nih.nci.ncicb.tcga.dcc.datareports.dao.StatsDashboardDAO
• gov.nih.nci.ncicb.tcga.dcc.datareports.service.StatsDashboardService
• gov.nih.nci.ncicb.tcga.dcc.datareports.service.SubmissionReportService
• gov.nih.nci.ncicb.tcga.dcc.common.util.TabDelimitedContent
• gov.nih.nci.ncicb.tcga.dcc.dam.util.TabDelimitedContent
• gov.nih.nci.ncicb.tcga.dcc.common.dao.TissueSourceSiteQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.TissueSourceSiteQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.TraceInfoQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.TraceRelationshipQueries
• gov.nih.nci.ncicb.tcga.dcc.dam.service.TumorDetailsService
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.TumorMainCountQueries
• gov.nih.nci.ncicb.tcga.dcc.dam.service.TumorMainService
• gov.nih.nci.ncicb.tcga.dcc.dam.util.TumorNormalClassifierI
• gov.nih.nci.ncicb.tcga.dcc.common.dao.TumorQueries
• gov.nih.nci.ncicb.tcga.dcc.dam.dao.usage.UsageLoggerI
• gov.nih.nci.ncicb.tcga.dcc.uuid.dao.UUIDBrowserDAO
• gov.nih.nci.ncicb.tcga.dcc.uuid.service.UUIDBrowserService
• gov.nih.nci.ncicb.tcga.dcc.uuid.service.UUIDCommonService<X>
• gov.nih.nci.ncicb.tcga.dcc.common.dao.UUIDDAO
• gov.nih.nci.ncicb.tcga.dcc.common.dao.UUIDHierarchyQueries
• gov.nih.nci.ncicb.tcga.dcc.common.service.UUIDService
• gov.nih.nci.ncicb.tcga.dcc.common.dao.UUIDTypeQueries
• gov.nih.nci.ncicb.tcga.dcc.uuid.webservice.UUIDWebServiceUtil
• gov.nih.nci.ncicb.tcga.dcc.qclive.webservice.client.ValidationWebServiceQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.VcfFileDataLineValidator
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.VcfHeaderDefinitionQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.VcfHeaderDefinitionStore
• gov.nih.nci.ncicb.tcga.dcc.qclive.common.VcfParser
• gov.nih.nci.ncicb.tcga.dcc.qclive.dao.VisibilityQueries
• gov.nih.nci.ncicb.tcga.dcc.qclive.service.VisibilityService
• gov.nih.nci.ncicb.tcga.dcc.common.util.XmlParser

Annotation Type Hierarchy

• gov.nih.nci.ncicb.tcga.dcc.common.annotations.TCGAValue (implements java.lang.annotation.Annotation)
• gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.AssertElement (implements java.lang.annotation.Annotation)
• gov.nih.nci.ncicb.tcga.dcc.common.aspect.cache.Cached (implements java.lang.annotation.Annotation)
• gov.nih.nci.ncicb.tcga.dcc.common.aspect.cache.ClearCache (implements java.lang.annotation.Annotation)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • gov.nih.nci.cbiit.tcga.dcc.common.jaxb.generated.levelthreedata.DataType
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.ControlElementType
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.TemplateType
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.BcrFileType
    • gov.nih.nci.ncicb.tcga.dcc.common.jaxb.generated.template.ElementFilterType
    • gov.nih.nci.ncicb.tcga.dcc.SchemaType
    • gov.nih.nci.ncicb.tcga.dcc.CommandLineOptionType
    • gov.nih.nci.ncicb.tcga.dcc.common.levelthreedata.bean.DataType
    • gov.nih.nci.ncicb.tcga.dcc.common.service.StatusCallback.Status
    • gov.nih.nci.ncicb.tcga.dcc.common.webservice.WebServiceUtil.ReturnType
    • gov.nih.nci.ncicb.tcga.dcc.common.bean.Duration
    • gov.nih.nci.ncicb.tcga.dcc.common.bean.validation.AssertionType
    • gov.nih.nci.ncicb.tcga.dcc.common.util.TableName
    • gov.nih.nci.ncicb.tcga.dcc.common.util.StringUtil.CaseSensitivity
    • gov.nih.nci.ncicb.tcga.dcc.common.util.FileName
    • gov.nih.nci.ncicb.tcga.dcc.common.util.PatternMatcher
    • gov.nih.nci.ncicb.tcga.dcc.common.util.DataLevel
    • gov.nih.nci.ncicb.tcga.dcc.common.util.ArchiveTypeName
    • gov.nih.nci.ncicb.tcga.dcc.common.util.DataTypeName
    • gov.nih.nci.ncicb.tcga.dcc.common.util.SpringBeanName
    • gov.nih.nci.ncicb.tcga.dcc.common.util.UUIDConstants.GenerationMethod
    • gov.nih.nci.ncicb.tcga.dcc.common.util.PlatformName
    • gov.nih.nci.ncicb.tcga.dcc.common.util.ProjectCode
    • gov.nih.nci.ncicb.tcga.dcc.io.api.domain.analytics.Metric.Type
    • gov.nih.nci.ncicb.tcga.dcc.io.api.IoUriComponent
    • gov.nih.nci.ncicb.tcga.dcc.io.api.event.EventType
    • gov.nih.nci.ncicb.tcga.dcc.io.api.codec.kryo.Kryo02FrameDecoder.FrameDecoderState
    • gov.nih.nci.ncicb.tcga.dcc.io.api.config.IoApiConfigProfileType
    • gov.nih.nci.ncicb.tcga.dcc.io.api.handler.message.DefaultMessageHandlerContext.AttributeKey
    • gov.nih.nci.ncicb.tcga.dcc.io.api.lifecycle.LifecycleGroup
    • gov.nih.nci.ncicb.tcga.dcc.qclive.standalone.ValidatorOptionType
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.VcfFileDataLineValidatorImpl.VcfColumns
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.DateComparator.Operator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.SdrfProcessor.SDRFType
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ClinicalLoaderCaller.FileType
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.ArchiveLoader.ArchiveLoaderType
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.MafFileValidator.ConditionalOperator
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.util.PurityPloidyAbsolute
    • gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.validation.util.MessagePropertyType
    • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file.segment.MskccOrgSegmentRecord.Header
    • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file.segment.GenomeWustlEduSegmentRecord.Header
    • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file.segment.BroadMitEduSegmentRecord.Header
    • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file.segment.HudsonAlphaOrgSegmentRecord.Header
    • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthree.record.file.segment.HmsHarvardEduSegmentRecord.Header
    • gov.nih.nci.ncicb.tcga.dcc.io.server.api.Server.TransportProtocol
    • gov.nih.nci.ncicb.tcga.dcc.qclive.loader.levelthreedata.LoaderOptionType
    • gov.nih.nci.ncicb.tcga.dcc.dam.view.request.FilterRequestI.Mode
    • gov.nih.nci.ncicb.tcga.dcc.dam.view.request.ColorSchemeRequest.Mode
    • gov.nih.nci.ncicb.tcga.dcc.dam.view.Header.HeaderType
    • gov.nih.nci.ncicb.tcga.dcc.dam.view.Header.HeaderCategory
    • gov.nih.nci.ncicb.tcga.dcc.dam.view.QueueMonitorItem.JobType
    • gov.nih.nci.ncicb.tcga.dcc.dam.view.QueueMonitorItem.QueueType
    • gov.nih.nci.ncicb.tcga.dcc.dam.view.QueueMonitorItem.RunningState
    • gov.nih.nci.ncicb.tcga.dcc.dam.webservice.NonplatformType
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.QuartzJobStatus (implements java.io.Serializable)
    • gov.nih.nci.ncicb.tcga.dcc.dam.bean.stats.DataTypeCount.CountType
    • gov.nih.nci.ncicb.tcga.dcc.dam.dao.DAMBaseQueriesProcessor.Control
    • gov.nih.nci.ncicb.tcga.dcc.dam.dao.usage.AbstractUsageLogger.ActionType